Supplementary Website for:

On the reliability and the limits of inference of amino acid sequence alignments

Sandun Rajapaksa, Dinithi Sumanaweera, Arthur Lesk, Lloyd Allison, Peter J. Stuckey, Maria Garcia de la Banda, David Abramson, and Arun S. Konagurthu

Details of domain pairs used in the manuscript

Expected and Empirical inter-alignment distance vs Markov time plots

Note: All the reference alignments reported by the 3 structure alignment programs are canonicalized in the form D*I* before computing the distance measures. See supplementary materials for more information.

Derivation of EAD recurrences given in the main text Section 3.2

C++ Source code
(distributed under GPL license)

Supplementary document