# MMLSUM Exp_Change = 0.4 log odds matrix (in 1/4-bit units)
# Default Gap-open  = 28
# Default Gap-extn  = 4
# Notes: Matrix derived from MMLSUM (t = 54) Markov Matrix
# File generated on: 2020/10/02 12:50:15
     A   R   N   D   C   Q   E   G   H   I   L   K   M   F   P   S   T   W   Y   V   
A   11  -6  -7  -8  -3  -4  -4  -3  -7  -6  -5  -5  -4  -8  -5  -1  -4 -10  -8  -2
R   -6  15  -4  -6 -10   0  -3  -9  -2 -10  -8   3  -6 -11  -8  -5  -5  -7  -5 -10
N   -7  -4  15   2 -10  -2  -4  -3  -2 -11 -13  -2  -8 -11  -6   0  -3 -12  -5 -11
D   -8  -6   2  14 -15  -3   2  -5  -5 -17 -15  -4 -13 -15  -6  -3  -5 -14 -11 -16
C   -3 -10 -10 -15  22 -12 -16 -12  -8  -6  -5 -14  -5  -5 -13  -4  -6  -8  -6  -4
Q   -4   0  -2  -3 -12  15   2  -9   0 -11  -8   1  -3 -11  -6  -3  -3 -10  -6  -9
E   -4  -3  -4   2 -16   2  13  -9  -5 -13 -12   0  -9 -14  -5  -4  -4 -13  -9 -10
G   -3  -9  -3  -5 -12  -9  -9  13  -8 -15 -14  -8 -11 -11  -7  -3  -8 -13 -12 -14
H   -7  -2  -2  -5  -8   0  -5  -8  19 -11  -8  -4  -8  -6  -8  -5  -6  -5   0 -10
I   -6 -10 -11 -17  -6 -11 -13 -15 -11  13   2 -10   1  -2 -10 -10  -6  -8  -8   4
L   -5  -8 -13 -15  -5  -8 -12 -14  -8   2  11 -10   2   0 -11 -11  -8  -6  -6  -1
K   -5   3  -2  -4 -14   1   0  -8  -4 -10 -10  13  -6 -14  -5  -4  -3 -13  -9 -11
M   -4  -6  -8 -13  -5  -3  -9 -11  -8   1   2  -6  18  -2 -12  -6  -5  -4  -4  -3
F   -8 -11 -11 -15  -5 -11 -14 -11  -6  -2   0 -14  -2  15 -10  -9  -8   0   3  -4
P   -5  -8  -6  -6 -13  -6  -5  -7  -8 -10 -11  -5 -12 -10  17  -4  -6 -12 -10  -8
S   -1  -5   0  -3  -4  -3  -4  -3  -5 -10 -11  -4  -6  -9  -4  12   2 -10  -7  -8
T   -4  -5  -3  -5  -6  -3  -4  -8  -6  -6  -8  -3  -5  -8  -6   2  13  -9  -7  -3
W  -10  -7 -12 -14  -8 -10 -13 -13  -5  -8  -6 -13  -4   0 -12 -10  -9  22   1 -10
Y   -8  -5  -5 -11  -6  -6  -9 -12   0  -8  -6  -9  -4   3 -10  -7  -7   1  16  -7
V   -2 -10 -11 -16  -4  -9 -10 -14 -10   4  -1 -11  -3  -4  -8  -8  -3 -10  -7  12