# MMLSUM Exp_Change = 0.1 log odds matrix (in 1/4-bit units)
# Default Gap-open  = 31.8617
# Default Gap-extn  = 4.7239
# Notes: Matrix derived from MMLSUM (t = 11) Markov Matrix
# File generated on: 2020/10/02 12:50:15
    A        R        N        D        C        Q        E        G        H        I        L        K        M        F        P        S        T        W        Y        V        
A  13.7471 -13.9464 -15.9346 -18.1177 -11.1095 -11.2582 -11.7376 -10.7605 -15.8601 -15.5354 -13.4233 -12.7201 -11.8349 -16.8797 -12.4996  -7.4303 -11.8688 -18.4866 -16.3943  -9.7068 
R -13.9464  17.0594 -12.0012 -15.4812 -18.1603  -7.3842 -10.7198 -17.9615  -9.2564 -18.4850 -15.6344  -3.5411 -13.9840 -20.9368 -16.5460 -12.7098 -13.6397 -15.4118 -13.3761 -19.7511 
N -15.9346 -12.0012  17.6702  -5.6540 -18.3126  -9.5023 -12.4485 -11.2724  -9.0945 -20.1762 -23.1483  -9.3155 -16.7899 -20.6701 -14.6255  -7.5635 -10.6286 -21.6192 -12.9463 -21.1527 
D -18.1177 -15.4812  -5.6540  16.2919 -25.4268 -11.6500  -5.6251 -13.3740 -13.9165 -29.3640 -25.9423 -11.7577 -24.1202 -25.3295 -14.5173 -10.3317 -13.1135 -23.2844 -20.7955 -30.7465 
C -11.1095 -18.1603 -18.3126 -25.4268  23.6319 -22.6181 -31.2437 -21.1595 -16.7403 -15.3766 -13.4370 -26.3479 -13.1399 -13.2381 -23.5114 -11.4012 -14.5459 -16.3363 -14.5013 -12.2067 
Q -11.2582  -7.3842  -9.5023 -11.6500 -22.6181  18.2145  -4.7974 -18.3023  -7.6123 -21.1910 -15.7201  -6.3933  -9.8580 -20.6646 -13.7866 -10.4125 -10.9027 -18.5742 -13.9028 -17.4050 
E -11.7376 -10.7198 -12.4485  -5.6251 -31.2437  -4.7974  15.5563 -18.7775 -13.4072 -22.8578 -20.9540  -7.6599 -17.3882 -25.0463 -13.6262 -11.8052 -12.1567 -23.4469 -18.3401 -18.3663 
G -10.7605 -17.9615 -11.2724 -13.3740 -21.1595 -18.3023 -18.7775  14.6690 -16.7213 -25.8103 -23.6441 -17.2766 -19.8556 -20.0869 -15.5814 -11.0205 -16.5420 -22.1158 -21.6169 -24.1268 
H -15.8601  -9.2564  -9.0945 -13.9165 -16.7403  -7.6123 -13.4072 -16.7213  20.8734 -20.7937 -16.9749 -11.8623 -16.2127 -14.2328 -17.1191 -13.0154 -14.7206 -13.6956  -7.0504 -19.3081 
I -15.5354 -18.4850 -20.1762 -29.3640 -15.3766 -21.1910 -22.8578 -25.8103 -20.7937  15.4446  -5.5497 -17.9271  -6.5269 -10.1533 -19.2687 -19.2073 -14.2683 -17.0562 -17.5469  -2.6092 
L -13.4233 -15.6344 -23.1483 -25.9423 -13.4370 -15.7201 -20.9540 -23.6441 -16.9749  -5.5497  13.2031 -19.0672  -4.3895  -7.7167 -20.0312 -21.1160 -16.2043 -14.3471 -15.0586  -8.7768 
K -12.7201  -3.5411  -9.3155 -11.7577 -26.3479  -6.3933  -7.6599 -17.2766 -11.8623 -17.9271 -19.0672  15.9753 -14.4077 -24.6560 -13.0262 -11.5188 -11.1676 -23.0818 -17.9500 -20.8692 
M -11.8349 -13.9840 -16.7899 -24.1202 -13.1399  -9.8580 -17.3882 -19.8556 -16.2127  -6.5269  -4.3895 -14.4077  21.2119  -9.4088 -21.8846 -13.9076 -12.5330 -12.4206 -11.6054 -11.2093 
F -16.8797 -20.9368 -20.6701 -25.3295 -13.2381 -20.6646 -25.0463 -20.0869 -14.2328 -10.1533  -7.7167 -24.6560  -9.4088  17.6281 -18.6771 -17.8831 -16.5556  -7.7150  -3.6862 -12.2805 
P -12.4996 -16.5460 -14.6255 -14.5173 -23.5114 -13.7866 -13.6262 -15.5814 -17.1191 -19.2687 -20.0312 -13.0262 -21.8846 -18.6771  18.0901 -11.7296 -14.1688 -21.6412 -18.5577 -16.2157 
S  -7.4303 -12.7098  -7.5635 -10.3317 -11.4012 -10.4125 -11.8052 -11.0205 -13.0154 -19.2073 -21.1160 -11.5188 -13.9076 -17.8831 -11.7296  15.2291  -4.7552 -19.0801 -15.9170 -17.6737 
T -11.8688 -13.6397 -10.6286 -13.1135 -14.5459 -10.9027 -12.1567 -16.5420 -14.7206 -14.2683 -16.2043 -11.1676 -12.5330 -16.5556 -14.1688  -4.7552  15.6351 -17.4559 -14.8046 -10.1369 
W -18.4866 -15.4118 -21.6192 -23.2844 -16.3363 -18.5742 -23.4469 -22.1158 -13.6956 -17.0562 -14.3471 -23.0818 -12.4206  -7.7150 -21.6412 -19.0801 -17.4559  23.4527  -6.3041 -19.8271 
Y -16.3943 -13.3761 -12.9463 -20.7955 -14.5013 -13.9028 -18.3401 -21.6169  -7.0504 -17.5469 -15.0586 -17.9500 -11.6054  -3.6862 -18.5577 -15.9170 -14.8046  -6.3041  18.3919 -15.1322 
V  -9.7068 -19.7511 -21.1527 -30.7465 -12.2067 -17.4050 -18.3663 -24.1268 -19.3081  -2.6092  -8.7768 -20.8692 -11.2093 -12.2805 -16.2157 -17.6737 -10.1369 -19.8271 -15.1322  14.0259