# MMLSUM Exp_Change = 0.2 log odds matrix (in 1/4-bit units)
# Default Gap-open  = 31.8617
# Default Gap-extn  = 4.6198
# Notes: Matrix derived from MMLSUM (t = 23) Markov Matrix
# File generated on: 2020/10/02 12:50:15
    A        R        N        D        C        Q        E        G        H        I        L        K        M        F        P        S        T        W        Y        V        
A  13.0356  -9.9509 -11.6881 -13.6641  -7.2576  -7.4584  -7.9104  -6.9197 -11.7512 -11.2459  -9.5071  -8.8191  -8.0308 -12.7228  -8.5933  -3.8238  -7.9263 -14.3374 -12.3200  -6.0150 
R  -9.9509  16.3475  -8.0464 -11.2057 -14.0686  -3.6817  -6.7827 -13.7544  -5.4577 -14.3101 -11.6974   0.0354 -10.0645 -16.4194 -12.3414  -8.7656  -9.6140 -11.4625  -9.4907 -15.3735 
N -11.6881  -8.0464  16.9158  -1.9715 -14.1539  -5.7491  -8.3448  -7.3856  -5.3310 -16.0488 -18.5048  -5.5523 -12.7674 -16.3082 -10.5676  -3.9167  -6.7893 -17.1854  -9.1124 -16.7151 
D -13.6641 -11.2057  -1.9715  15.7039 -20.6032  -7.6233  -1.9368  -9.3730  -9.8574 -23.9756 -21.2578  -7.7712 -19.1667 -20.7378 -10.4610  -6.5074  -9.1066 -18.9397 -16.3555 -24.2844 
C  -7.2576 -14.0686 -14.1539 -20.6032  23.1873 -17.8363 -24.2396 -16.7255 -12.6760 -11.1505  -9.4324 -20.8715  -9.1869  -9.2511 -18.7868  -7.5974 -10.5062 -12.2183 -10.4754  -8.2828 
Q  -7.4584  -3.6817  -5.7491  -7.6233 -17.8363  17.2936  -1.2345 -13.9647  -3.9452 -16.4518 -11.7762  -2.7544  -6.2804 -16.1724  -9.8011  -6.6256  -7.0924 -14.4260 -10.0012 -13.2817 
E  -7.9104  -6.7827  -8.3448  -1.9368 -24.2396  -1.2345  14.8458 -14.3654  -9.3576 -18.2057 -16.5919  -3.9323 -13.2131 -20.1799  -9.6266  -7.8753  -8.2423 -18.9080 -14.1449 -14.2592 
G  -6.9197 -13.7544  -7.3856  -9.3730 -16.7255 -13.9647 -14.3654  14.3072 -12.6088 -21.0551 -19.1569 -13.0685 -15.6484 -15.9690 -11.4872  -7.1642 -12.3250 -17.8463 -17.2107 -19.3547 
H -11.7512  -5.4577  -5.3310  -9.8574 -12.6760  -3.9452  -9.3576 -12.6088  20.2429 -16.3433 -12.9144  -7.8987 -12.0928 -10.1944 -12.9524  -9.0807 -10.6505  -9.6764  -3.3140 -15.0447 
I -11.2459 -14.3101 -16.0488 -23.9756 -11.1505 -16.4518 -18.2057 -21.0551 -16.3433  14.6182  -1.8683 -13.9370  -2.8630  -6.2627 -15.0252 -14.9005 -10.2226 -12.8611 -13.1160   0.9127 
L  -9.5071 -11.6974 -18.5048 -21.2578  -9.4324 -11.7762 -16.5919 -19.1569 -12.9144  -1.8683  12.5948 -14.8144  -0.7984  -3.9439 -15.7644 -16.4578 -12.0759 -10.2838 -10.8596  -4.8878 
K  -8.8191   0.0354  -5.5523  -7.7712 -20.8715  -2.7544  -3.9323 -13.0685  -7.8987 -13.9370 -14.8144  15.1968 -10.5043 -19.6877  -9.0928  -7.6294  -7.3437 -18.4128 -13.6859 -16.2751 
M  -8.0308 -10.0645 -12.7674 -19.1667  -9.1869  -6.2804 -13.2131 -15.6484 -12.0928  -2.8630  -0.7984 -10.5043  20.2740  -5.5667 -17.1906 -10.0550  -8.7092  -8.5157  -7.7627  -7.1440 
F -12.7228 -16.4194 -16.3082 -20.7378  -9.2511 -16.1724 -20.1799 -15.9690 -10.1944  -6.2627  -3.9439 -19.6877  -5.5667  17.0019 -14.5717 -13.7962 -12.4633  -3.8357   0.0022  -8.2595 
P  -8.5933 -12.3414 -10.5676 -10.4610 -18.7868  -9.8011  -9.6266 -11.4872 -12.9524 -15.0252 -15.7644  -9.0928 -17.1906 -14.5717  17.6487  -7.8637 -10.1379 -17.3435 -14.3885 -12.2065 
S  -3.8238  -8.7656  -3.9167  -6.5074  -7.5974  -6.6256  -7.8753  -7.1642  -9.0807 -14.9005 -16.4578  -7.6294 -10.0550 -13.7962  -7.8637  14.3597  -1.2408 -14.9045 -11.8700 -13.2848 
T  -7.9263  -9.6140  -6.7893  -9.1066 -10.5062  -7.0924  -8.2423 -12.3250 -10.6505 -10.2226 -12.0759  -7.3437  -8.7092 -12.4633 -10.1379  -1.2408  14.8514 -13.3844 -10.8337  -6.4484 
W -14.3374 -11.4625 -17.1854 -18.9397 -12.2183 -14.4260 -18.9080 -17.8463  -9.6764 -12.8611 -10.2838 -18.4128  -8.5157  -3.8357 -17.3435 -14.9045 -13.3844  23.0475  -2.4538 -15.3451 
Y -12.3200  -9.4907  -9.1124 -16.3555 -10.4754 -10.0012 -14.1449 -17.2107  -3.3140 -13.1160 -10.8596 -13.6859  -7.7627   0.0022 -14.3885 -11.8700 -10.8337  -2.4538  17.8048 -11.1023 
V  -6.0150 -15.3735 -16.7151 -24.2844  -8.2828 -13.2817 -14.2592 -19.3547 -15.0447   0.9127  -4.8878 -16.2751  -7.1440  -8.2595 -12.2065 -13.2848  -6.4484 -15.3451 -11.1023  13.2939