# MMLSUM Exp_Change = 0.3 log odds matrix (in 1/4-bit units) # Default Gap-open = 31.8617 # Default Gap-extn = 4.4351 # Notes: Matrix derived from MMLSUM (t = 37) Markov Matrix # File generated on: 2020/10/02 12:50:15 A R N D C Q E G H I L K M F P S T W Y V A 12.2210 -7.5106 -8.9989 -10.7697 -4.9774 -5.2319 -5.6528 -4.6510 -9.1874 -8.5310 -7.1486 -6.4801 -5.7959 -10.1064 -6.2501 -1.8188 -5.5561 -11.7183 -9.7866 -3.9081 R -7.5106 15.5306 -5.6552 -8.4809 -11.5065 -1.5716 -4.4162 -11.0780 -3.2388 -11.6677 -9.3091 1.9976 -7.7051 -13.4480 -9.6792 -6.3810 -7.1456 -9.0636 -7.1660 -12.5321 N -8.9989 -5.6552 16.0470 0.1137 -11.5303 -3.5746 -5.8062 -5.0643 -3.1507 -13.4328 -15.4053 -3.3686 -10.2871 -13.4804 -8.0580 -1.8656 -4.5264 -14.2828 -6.8458 -13.8106 D -10.7697 -8.4809 0.1137 15.0295 -17.3258 -5.1639 0.1554 -6.9240 -7.3498 -20.2190 -18.0792 -5.3460 -15.8209 -17.6511 -7.9517 -4.2553 -6.6587 -16.1009 -13.4532 -19.9204 C -4.9774 -11.5065 -11.5303 -17.3258 22.6698 -14.6324 -19.6221 -13.8248 -10.1521 -8.4745 -6.9790 -17.1272 -6.7882 -6.8173 -15.6132 -5.3670 -8.0206 -9.6387 -7.9985 -5.9172 Q -5.2319 -1.5716 -3.5746 -5.1639 -14.6324 16.2345 0.7168 -11.1669 -1.8724 -13.3137 -9.3807 -0.7154 -4.2989 -13.2283 -7.3687 -4.4142 -4.8554 -11.8095 -7.6575 -10.6944 E -5.6528 -4.4162 -5.8062 0.1554 -19.6221 0.7168 14.0340 -11.4934 -6.8655 -15.1047 -13.7583 -1.7930 -10.5879 -16.8741 -7.1801 -5.5104 -5.8917 -15.8941 -11.4834 -11.6829 G -4.6510 -11.0780 -5.0643 -6.9240 -13.8248 -11.1669 -11.4934 13.8892 -10.0345 -17.8254 -16.1871 -10.3960 -12.9684 -13.3762 -8.9356 -4.8760 -9.6545 -15.0936 -14.3309 -16.1461 H -9.1874 -3.2388 -3.1507 -7.3498 -10.1521 -1.8724 -6.8655 -10.0345 19.5113 -13.4269 -10.3914 -5.5004 -9.5214 -7.7111 -10.3221 -6.7050 -8.1317 -7.2103 -1.1692 -12.3078 I -8.5310 -11.6677 -13.4328 -20.2190 -8.4745 -13.3137 -15.1047 -17.8254 -13.4269 13.6902 0.2190 -11.4712 -0.7917 -3.9393 -12.3141 -12.1220 -7.7396 -10.1978 -10.2423 2.8172 L -7.1486 -9.3091 -15.4053 -18.0792 -6.9790 -9.3807 -13.7583 -16.1871 -10.3914 0.2190 11.9074 -12.0997 1.1841 -1.7539 -13.0225 -13.3741 -9.4913 -7.7670 -8.2110 -2.5756 K -6.4801 1.9976 -3.3686 -5.3460 -17.1272 -0.7154 -1.7930 -10.3960 -5.5004 -11.4712 -12.0997 14.3079 -8.1589 -16.3102 -6.7162 -5.3076 -5.0905 -15.2976 -10.9663 -13.2497 M -5.7959 -7.7051 -10.2871 -15.8209 -6.7882 -4.2989 -10.5879 -12.9684 -9.5214 -0.7917 1.1841 -8.1589 19.1901 -3.2998 -14.0661 -7.7613 -6.4502 -6.1695 -5.4846 -4.6524 F -10.1064 -13.4480 -13.4804 -17.6511 -6.8173 -13.2283 -16.8741 -13.3762 -7.7111 -3.9393 -1.7539 -16.3102 -3.2998 16.2822 -11.9969 -11.2408 -9.9118 -1.5287 2.0903 -5.7963 P -6.2501 -9.6792 -8.0580 -7.9517 -15.6132 -7.3687 -7.1801 -8.9356 -10.3221 -12.3141 -13.0225 -6.7162 -14.0661 -11.9969 17.1360 -5.5634 -7.6606 -14.5634 -11.7507 -9.7414 S -1.8188 -6.3810 -1.8656 -4.2553 -5.3670 -4.4142 -5.5104 -4.8760 -6.7050 -12.1220 -13.3741 -5.3076 -7.7613 -11.2408 -5.5634 13.3684 0.6542 -12.2596 -9.3702 -10.4717 T -5.5561 -7.1456 -4.5264 -6.6587 -8.0206 -4.8554 -5.8917 -9.6545 -8.1317 -7.7396 -9.4913 -5.0905 -6.4502 -9.9118 -7.6606 0.6542 13.9530 -10.8487 -8.4137 -4.3437 W -11.7183 -9.0636 -14.2828 -16.1009 -9.6387 -11.8095 -15.8941 -15.0936 -7.2103 -10.1978 -7.7670 -15.2976 -6.1695 -1.5287 -14.5634 -12.2596 -10.8487 22.5764 -0.1807 -12.4020 Y -9.7866 -7.1660 -6.8458 -13.4532 -7.9985 -7.6575 -11.4834 -14.3309 -1.1692 -10.2423 -8.2110 -10.9663 -5.4846 2.0903 -11.7507 -9.3702 -8.4137 -0.1807 17.1280 -8.6128 V -3.9081 -12.5321 -13.8106 -19.9204 -5.9172 -10.6944 -11.6829 -16.1461 -12.3078 2.8172 -2.5756 -13.2497 -4.6524 -5.7963 -9.7414 -10.4717 -4.3437 -12.4020 -8.6128 12.4712