# MMLSUM Exp_Change = 0.4 log odds matrix (in 1/4-bit units) # Default Gap-open = 27.5747 # Default Gap-extn = 4.1235 # Notes: Matrix derived from MMLSUM (t = 54) Markov Matrix # File generated on: 2020/10/02 12:50:15 A R N D C Q E G H I L K M F P S T W Y V A 11.2566 -5.6945 -6.9315 -8.4923 -3.3453 -3.6555 -4.0398 -3.0313 -7.2327 -6.4565 -5.4177 -4.7751 -4.2048 -8.0922 -4.5426 -0.5042 -3.8338 -9.6868 -7.8564 -2.4674 R -5.6945 14.5598 -3.9006 -6.3701 -9.5319 -0.1401 -2.6963 -8.9900 -1.6804 -9.6159 -7.5347 3.2485 -5.9762 -11.0748 -7.6211 -4.6272 -5.3041 -7.2813 -5.4728 -10.2826 N -6.9315 -3.9006 15.0100 1.5128 -9.5012 -2.0584 -3.9040 -3.3825 -1.6351 -11.3801 -12.8961 -1.8443 -8.4116 -11.2411 -6.1626 -0.4968 -2.9180 -11.9635 -5.2201 -11.4919 D -8.4923 -6.3701 1.5128 14.2282 -14.6333 -3.3451 1.5631 -5.0946 -5.4612 -17.0988 -15.4486 -3.5540 -13.1144 -15.1127 -6.0547 -2.6522 -4.8404 -13.8157 -11.1420 -16.4392 C -3.3453 -9.5319 -9.5012 -14.6333 22.0430 -12.0486 -16.0012 -11.5099 -8.2306 -6.4121 -5.1444 -14.0955 -5.0129 -5.0053 -13.0340 -3.7870 -6.1570 -7.6586 -6.1368 -4.1804 Q -3.6555 -0.1401 -2.0584 -3.3451 -12.0486 14.9740 1.9621 -8.9664 -0.4804 -10.8203 -7.5987 0.6346 -2.9976 -10.8852 -5.5577 -2.8560 -3.2689 -9.7830 -5.9414 -8.7038 E -4.0398 -2.6963 -3.9040 1.5631 -16.0012 1.9621 13.0748 -9.2172 -5.0001 -12.6012 -11.5065 -0.3263 -8.5752 -14.1664 -5.3551 -3.7843 -4.1778 -13.4526 -9.4143 -9.6957 G -3.0313 -8.9900 -3.3825 -5.0946 -11.5099 -8.9664 -9.2172 13.3876 -8.0595 -15.1626 -13.7822 -8.3186 -10.8713 -11.3639 -6.9897 -3.2310 -7.5928 -12.9089 -12.0294 -13.5420 H -7.2327 -1.6804 -1.6351 -5.4612 -8.2306 -0.4804 -5.0001 -8.0595 18.6291 -11.0970 -8.4672 -3.7411 -7.5625 -5.8517 -8.2887 -4.9590 -6.2310 -5.3657 0.2976 -10.1529 I -6.4565 -9.6159 -11.3801 -17.0988 -6.4121 -10.8203 -12.6012 -15.1626 -11.0970 12.6184 1.6252 -9.5862 0.6013 -2.2581 -10.1923 -9.9292 -5.8890 -8.1250 -7.9836 4.0068 L -5.4177 -7.5347 -12.8961 -15.4486 -5.1444 -7.5987 -11.5065 -13.7822 -8.4672 1.6252 11.1061 -9.9810 2.4645 -0.2285 -10.8601 -10.9129 -7.5141 -5.8616 -6.1775 -0.9191 K -4.7751 3.2485 -1.8443 -3.5540 -14.0955 0.6346 -0.3263 -8.3186 -3.7411 -9.5862 -9.9810 13.2591 -6.4407 -13.5558 -4.9663 -3.6282 -3.4837 -12.7817 -8.8515 -10.8431 M -4.2048 -5.9762 -8.4116 -13.1144 -5.0129 -2.9976 -8.5752 -10.8713 -7.5625 0.6013 2.4645 -6.4407 17.8911 -1.6864 -11.5573 -6.0963 -4.8287 -4.4527 -3.8441 -2.8090 F -8.0922 -11.0748 -11.2411 -15.1127 -5.0053 -10.8852 -14.1664 -11.3639 -5.8517 -2.2581 -0.2285 -13.5558 -1.6864 15.4249 -10.0107 -9.2757 -7.9636 0.1284 3.4869 -3.9612 P -4.5426 -7.6211 -6.1626 -6.0547 -13.0340 -5.5577 -5.3551 -6.9897 -8.2887 -10.1923 -10.8601 -4.9663 -11.5573 -10.0107 16.5173 -3.9024 -5.8048 -12.3522 -9.7024 -7.8843 S -0.5042 -4.6272 -0.4968 -2.6522 -3.7870 -2.8560 -3.7843 -3.2310 -4.9590 -9.9292 -10.9129 -3.6282 -6.0963 -9.2757 -3.9024 12.2014 1.8318 -10.2027 -7.4826 -8.2950 T -3.8338 -5.3041 -2.9180 -4.8404 -6.1570 -3.2689 -4.1778 -7.5928 -6.2310 -5.8890 -7.5141 -3.4837 -4.8287 -7.9636 -5.8048 1.8318 12.8875 -8.9090 -6.6114 -2.9034 W -9.6868 -7.2813 -11.9635 -13.8157 -7.6586 -9.7830 -13.4526 -12.9089 -5.3657 -8.1250 -5.8616 -12.7817 -4.4527 0.1284 -12.3522 -10.2027 -8.9090 22.0065 1.4351 -10.0506 Y -7.8564 -5.4728 -5.2201 -11.1420 -6.1368 -5.9414 -9.4143 -12.0294 0.2976 -7.9836 -6.1775 -8.8515 -3.8441 3.4869 -9.7024 -7.4826 -6.6114 1.4351 16.3183 -6.7269 V -2.4674 -10.2826 -11.4919 -16.4392 -4.1804 -8.7038 -9.6957 -13.5420 -10.1529 4.0068 -0.9191 -10.8431 -2.8090 -3.9612 -7.8843 -8.2950 -2.9034 -10.0506 -6.7269 11.5191