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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:43:44 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/AAA.html
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#====================================
# Aligned_structures: 4
#   1: 1d2na.pdb
#   2: 1e32a.pdb
#   3: 1e94e.pdb
#   4: 1g41a.pdb
#
# Length:        475
# Identity:       16/475 (  3.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     52/475 ( 10.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          280/475 ( 58.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1d2na.pdb               1  -----------EDYASYIM---NGIIKWGDP-VTRVLDDGELLVQQTK--NSDRTPL---   40
1e32a.pdb               1  -REDEEESLNEVGYDDVG-------------GCRKQLAQIKEMVELPLRHPA-----LFK   41
1e94e.pdb               1  H---SEMTPRE-IVSELDKHII---------GQDNAKRSVAIALRNRW--RRM-----QL   40
1g41a.pdb               1  ----SEMTPRE-IVSELDQHII---------GQADAKRAVAIALRNRW--RRM-----QL   39
                                                                                       

1d2na.pdb              41  -----------VSVLLEGPPHSGKTALAAKIAEESNFPFI-KICSPDKMI-----GFSET   83
1e32a.pdb              42  A----IGVKPPRGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEIM-----SKLAG   90
1e94e.pdb              41  NEELRHEVTP-KNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEVGYVGK---   94
1g41a.pdb              40  QEPLRHEVTP-KNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFT----VGK---   89
                                        iL  GP g GKT iAr  A   na          k       gk   

1d2na.pdb              84  AKCQAMKKIFDDAYKSQ-------------------------------------------  100
1e32a.pdb              91  ESESNLRKAFEEAEKNA-------------------------------------------  107
1e94e.pdb              95  EVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSA  154
1g41a.pdb              90  EVDSIIRDLTDSAMKLVRQQEIAKNR------------------------------LIDD  119
                           e  s  r   d A K                                             

1d2na.pdb                  ------------------------------------------------------------     
1e32a.pdb                  ------------------------------------------------------------     
1e94e.pdb             155  ARQAFRKKLREGQLDDKEIEKQKARKLKIKDAMKLLIEEEAAKLVN---PEELKQDAIDA  211
1g41a.pdb             120  --------EAA-----------------------------------KLINPEELKQKAID  136
                                                                                       

1d2na.pdb             101  ---LSCVVVDDIERLLDYVP-------IGPRF-----SNLVLQALLVLLKK-APPQ----  140
1e32a.pdb             108  ---PAIIFIDELDAIAP--K-------REK--THGEVERRIVSQLLTLMDGLK---Q---  147
1e94e.pdb             212  VEQHGIVFIDEIDKICK-RG-E-SSGP-------DVSREGVQRDLLPLVEGCT---VSTK  258
1g41a.pdb             137  AVEQNGIVFIDEIDKIC--KKGEYSGA-------DVSREGVQRDLLPLVEGST---VSTK  184
                                    d                              v   LL L  g         

1d2na.pdb             141  -------GRKLLIIGTTSR----KDVLQEM-EMLN--AFSTTIHVPNIATGEQLLEALE-  185
1e32a.pdb             148  -------RAHVIVMAATNR----PNSID--PALRRFGRFDREVDIGIPD-ATGRLEILQ-  192
1e94e.pdb             259  HGMVKTD--HILFIASGAFQIAKPSDLI--PELQG--RLPIRVELQALT-TSDFERILTE  311
1g41a.pdb             185  HGMVKTD--HILFIASGAFQVARPSDLI--PELQG--RLPIRVELTALS-AADFERILTE  237
                                    h l ia        p  l    el    r    v             iL  

1d2na.pdb             186  ---LLG---N-----------FKDK----ERTTIAQQVKGKKV-WIGIKKLLMLIEMSLQ  223
1e32a.pdb             193  ---IHTKNMK-----------LADD----V-D-LEQVANET-H-GHVGADLAALCSEAAL  230
1e94e.pdb             312  PNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENI--GARRLHTVLERLME  369
1g41a.pdb             238  PHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENI--GARRLHTVMERLMD  295
                                t   k           f d           qv   t     g   L    e    

1d2na.pdb             224  MD-----------------PEY------RVRKFLALLREEGA---------SPLD  246
1e32a.pdb             231  QAIRKKMDLIDL-EDETIDAEVMNSLAVTMDDFRWALSQ----------------  268
1e94e.pdb             370  EISY-DASDLSGQ-----------NITIDADYVSKHLDALVADEDLSRFIL----  408
1g41a.pdb             296  KISF-SASDMNGQ-----------TVNIDAAYVADALGEVVENEDLSRFIL----  334
                                                               L                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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