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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:23:16 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ADF.html
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#====================================
# Aligned_structures: 3
#   1: 1ak6.pdb
#   2: 1cnua.pdb
#   3: 1cof.pdb
#
# Length:        182
# Identity:       30/182 ( 16.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     83/182 ( 45.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           57/182 ( 31.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ak6.pdb                1  TMITPSSGNSASGVQVADEVCRIFYDMKVRKCSTPEEIKK--RKKAVIFCLSADKKCIIV   58
1cnua.pdb               1  ------------GIAVSDDCVQKFNELK-----------LGHQHRYVTFKMNASNTEVVV   37
1cof.pdb                1  -------------VAVADESLTAFNDLK-----------LGKKYKFILFGLNDAKTEIVV   36
                                        vaVaDe    FndlK           l    k v F lna kteivV

1ak6.pdb               59  EEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-----RKEELMFFLW  113
1cnua.pdb              38  E--HVGGPN-A------TYEDFKSQLPERDCRYAIFDYEFQV---D--GGQRNKITFILW   83
1cof.pdb               37  K--ETST---D-----PSYDAFLEKLPENDCLYAIYDFEYEI---NGNEGKRSKIVFFTW   83
                           e                 y  F   LPE DCrYAiyD efe          r ki FflW

1ak6.pdb              114  APELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEKLGGS-LIVAFEGC  172
1cnua.pdb              84  APDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERAKK----------  133
1cof.pdb               84  SPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERVSRGA--------  135
                           aPd AP kSKM YaSsKDaikkkl Gi  evQatd  e s d v Er             

1ak6.pdb              173  PV  174
1cnua.pdb                  --     
1cof.pdb                   --     
                             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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