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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:46:02 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ARID.html
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#====================================
# Aligned_structures: 2
#   1: 1c20a.pdb
#   2: 1ig6a.pdb
#
# Length:        143
# Identity:       24/143 ( 16.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     24/143 ( 16.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           51/143 ( 35.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1c20a.pdb               1  GWSFEEQFKQVRQLYEINDDPKRKEFLDDLFSFMQK---RGTPINRL---PIMAKSVLDL   54
1ig6a.pdb               1  ----------------------RADEQAFLVALYKYMKERKTPI---ERIPYLGFKQINL   35
                                                 R      L         R TPI      P        L

1c20a.pdb              55  YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNL  114
1ig6a.pdb              36  WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKG-   94
                                     GG         W  I   L      TSAA   R  Y     PYE   K  

1c20a.pdb             115  STPAELQAAIDGNR---------  128
1ig6a.pdb              95  ---EEDK-------PLPPIKPRK  107
                               E                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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