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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 05:09:51 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ATP-synt.html
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#====================================
# Aligned_structures: 4
#   1: 1maba.pdb
#   2: 1mabb.pdb
#   3: 1skyb.pdb
#   4: 1skye.pdb
#
# Length:        555
# Identity:       71/555 ( 12.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    119/555 ( 21.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          127/555 ( 22.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1maba.pdb               1  -SSILEERIGADTSV---DLEETGRVLSIGDGIARVHGL--RNVQAEEMVEFS-------   47
1mabb.pdb               1  SAAPKAG-------------TATGQIVAVIGAVVDVQFDEG-LPPILNALEVQGR-----   41
1skyb.pdb               1  ---------------SQIQVSDVGTVIQVGDGIARAHGL--DNVMSGEAVEFA-------   36
1skye.pdb               1  --------------------MTRGRVIQVMGPVVDVKFENGHLPAIYNALKIQH-KARNE   39
                                                  G v  v      v            a e         

1maba.pdb              48  ----SGLKGMSLNLEP-DNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDAL  102
1mabb.pdb              42  ---ESRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVI   98
1skyb.pdb              37  ----NAVMGMALNLEE-NNVGIVILGPYTGIKEGDEVRRTGRIMEVPVGETLIGRVVNPL   91
1skye.pdb              40  NEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVL   99
                                 l            V         g   G  V  tGa   vPVG   lGRv n l

1maba.pdb             103  GNAIDGKGPVGSK-IRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGD  161
1mabb.pdb              99  GEPIDERGPIKTK-QFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGG  157
1skyb.pdb              92  GQPVDGLGPVETT-ETRPIESRAPGVMDRRSVHEPLQTGIKAIDALVPIGRGQRELIIGD  150
1skye.pdb             100  GEPIDLEGDIPADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGG  159
                           G piD  Gp        pi   AP         E l TGIK vD L P   G      G 

1maba.pdb             162  RQTGKTSIAIDTIINQ-KRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAM---  217
1mabb.pdb             158  AGVGKTVLIMELINNVAKAH--------GGYSVFAGVGERTREGNDLYHEMIESGVINLK  209
1skyb.pdb             151  RQTGKTSVAIDTIINQ-KDQ--------NMICIYVAIGQKESTVATVVETLAKHGAP---  198
1skye.pdb             160  AGVGKTVLIQELIHNIAQEH--------GGISVFAGVGERTREGNDLYHEMKDSGVI---  208
                              GKT      I N  k                   G        l       g     

1maba.pdb             218  ---KYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-GKHALIIYDDLSKQAVAYRQMS  273
1mabb.pdb             210  DATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVS  269
1skyb.pdb             199  ---DYTIVVTASASQPAPLLFLAPYAGVAMGEYFMIM-GKHVLVVIDDLSKQAAAYRQLS  254
1skye.pdb             209  ---SKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVS  265
                                t  V      p          G  m EYFrd  G   L  iD       A    S

1maba.pdb             274  LLLRRPPGREAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIETQAGDVSAYIPTNV  333
1mabb.pdb             270  ALLGRIPSAVGYQPTLATDMGTMQERITTTK----KGSITSVQAIYVPADDLTDPAPATT  325
1skyb.pdb             255  LLLRRPPGREAYPGDIFYLHSRLLERAAKLSDAKGGGSLTALPFVETQAGDISAYIPTNV  314
1skye.pdb             266  ALLGRMPSAIGYQPTLATEMGQLQERITSTA----KGSITSIQAIYVPADDYTDPAPATT  321
                            LL R P    Y          l ER          GS T    i   A D     P   

1maba.pdb             334  ISITDGQIFLETELFYKGIRPAINVGLSVSRVGS--AAQTRAMKQVAGTMKLELAQYREV  391
1mabb.pdb             326  FAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPN-IVGSEHYDVARGVQKILQDYKSL  384
1skyb.pdb             315  ISITDGQIFLQSDLFFSGVRPAINAGLSVSRVGG--AAQIKAMKKVAGTLRLDLAAYREL  372
1skye.pdb             322  FSHLDATTNLERKLAEMGIYPAVDPLVSTSRALAPE-IVGEEHYQVARKVQQTLERYKEL  380
                            s  D    L   l   Gi PA     S SR              VA      L  Y el

1maba.pdb             392  AA-----FAQF--GSD-LDAATQQLLSRGVRLTELLKQGQY----------SPMAIEEQV  433
1mabb.pdb             385  QDIIAIL---G--MDE-LSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHMGKLVPLKETI  438
1skyb.pdb             373  E------FAQF-----SDDKATQANVARGARTVEVLKQDLH----------QPIPVEKQV  411
1skye.pdb             381  QD-----IIAILGMDE-LSDEDKLVVHRARRIQFFLSQNFHVAEQFTGQPGSYVPVKETV  434
                                            l       v R  r    L Q                p  e v

1maba.pdb             434  AVIYAGVRGYLDKLEPSKIT---KFESAFLSHVVSQHQSLLGNIRTDGKISEQSDAKLKE  490
1mabb.pdb             439  KGFQQILAGDYDHLPEQAFYMVG----------------------------------PIE  464
1skyb.pdb             412  LIIYALTRGFLDDIPVEDVR---RFEKEFYLWLDQNGQHLLEHIRTTKDLPNEDDLNQAI  468
1skye.pdb             435  RGFKEILEGKYDHLPEDRFRLVG----------------------------------RIE  460
                                   G  D lp                                            e

1maba.pdb             491  IVTNFLAGFE---P-  501
1mabb.pdb             465  EAVAKADKLAEEH--  477
1skyb.pdb             469  EAFKKTFVV----SQ  479
1skye.pdb             461  EVVEKAKAMG-----  470
                           e   k          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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