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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:55:42 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ATP-synt_g.html
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#====================================
# Aligned_structures: 2
#   1: 1e79g.pdb
#   2: 1fs0g.pdb
#
# Length:        295
# Identity:       37/295 ( 12.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     37/295 ( 12.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          108/295 ( 36.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1e79g.pdb               1  ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEK------   54
1fs0g.pdb               1  ------KITKAM-------EMVAAS----KMRKSQDRMAASRPYAETMRKVIGHLAHYKH   43
                                                        K           R Y                

1e79g.pdb              55  ---ADIKTPE----LIIGVSSDRGLCGAIHSSVAKQMKSEAANL----KEVKIIGVGDKI  103
1fs0g.pdb              44  PYLEDRD---VKRVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKG  100
                               D             VS DRGLCG       K    E                G K 

1e79g.pdb             104  RSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLNS---GYEFDEGSIIFNRFRSVI  160
1fs0g.pdb             101  VSFFNS-VGGNVVAQVTGMGD-NPSLSELIGPVKVMLQAYDEG-RLDKLYIVSNKFINTM  157
                            S                 G   P            L     G   D   I  N F    

1e79g.pdb             161  SYKTEEKPIFSLDTISSAESMSIYD-----------DI-DADVLRNYQEYSLANIIYYSL  208
1fs0g.pdb             158  SQVPTISQLL-P-------------LPKHKSWDYLYEPDPKALLDTLLRRYVESQVYQGV  203
                           S                                          L            Y   

1e79g.pdb             209  KESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL  263
1fs0g.pdb             204  VENLASEQAARMVAMK---------------------------------------  219
                            E   SEQ ARM AM                                        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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