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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:19:52 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/AlaDh_PNT.html
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#====================================
# Aligned_structures: 2
#   1: 1f8ga.pdb
#   2: 1pjca.pdb
#
# Length:        409
# Identity:       96/409 ( 23.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     96/409 ( 23.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           89/409 ( 21.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f8ga.pdb               1  -KIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIAST   59
1pjca.pdb               1  MEIGVPKEIKNQEFRVGLSPSSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPS   60
                             I  PKE    E RV  SP  V  LV  G  V  E  AG GA   D     AGA     

1f8ga.pdb              60  AAQALSQADVVWKVQRPTAEEGT-DEVALIKEGAVL-CHLGALTNRPVVEALTKRKITAY  117
1pjca.pdb              61  AKDAWS-REMVVKVKEPL-----PAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAI  114
                           A  A S    V KV  P        E  L      L   L     R   E L     TA 

1f8ga.pdb             118  AEL-PRISRAQS-DILSSQSNLAGYRAVIDGAYEFA-------RAFPTAAG---TVPPAR  165
1pjca.pdb             115  AYETVELPNR-SLPLLTPMSIIAGRLSVQFGARFLERQQGGRGVLLG----GVPGVKPGK  169
                           A          S   L   S  AG   V  GA                       V P  

1f8ga.pdb             166  VLVFGVGVAGLQAIATAKRLGAVV-ATDVRAATKEQVESL-G--GKFITVDDEATAETAG  221
1pjca.pdb             170  VVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYS----------  219
                           V   G GV G  A   A  LGA V   D         E L G                  

1f8ga.pdb             222  GYAKEGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEVT---KKPGSVIIDL  278
1pjca.pdb             220  ------------NSAEIETAVAEADLLIGAVLVPGRRAPILVPASL-VEQMRTGSVIVDV  266
                                                   D  I   L PG  AP L            GSVI D 

1f8ga.pdb             279  AVEAGGNCPLSEPG----KIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDK  334
1pjca.pdb             267  AVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNSTLPYVVKL---  323
                           AV  GG      P           GV   G  N P  V   A        L         

1f8ga.pdb             335  DTKTLVK--------LEDETVSGTCVTRDGAIVHPALTGQGA-------  368
1pjca.pdb             324  -------ANQGLKALETDDALAKGLNVQAHRLVHPAVQ----QVFPDLA  361
                                            D              VHPA             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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