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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:20:17 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/AlaDh_PNT_D1.html
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#====================================
# Aligned_structures: 2
#   1: 1f8ga.pdb
#   2: 1pjca.pdb
#
# Length:        214
# Identity:       51/214 ( 23.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     51/214 ( 23.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           41/214 ( 19.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f8ga.pdb               1  -KIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIAST   59
1pjca.pdb               1  MEIGVPKEIKNQEFRVGLSPSSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPS   60
                             I  PKE    E RV  SP  V  LV  G  V  E  AG GA   D     AGA     

1f8ga.pdb              60  AAQALSQADVVWKVQRPTAEEGT-DEVALIKEGAVL-CHLGALTNRPVVEALTKRKITAY  117
1pjca.pdb              61  AKDAWS-REMVVKVKEPL-----PAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAI  114
                           A  A S    V KV  P        E  L      L   L     R   E L     TA 

1f8ga.pdb             118  AEL-PRISRAQS-DILSSQSNLVAADASPLFAKNLLNFLTPHVDKDTKTLVK--------  167
1pjca.pdb             115  AYETVELPNR-SLPLLTPMSIIVPWTATQALNNSTLPYVVKL----------ANQGLKAL  163
                           A          S   L   S  V   A        L                        

1f8ga.pdb             168  LEDETVSGTCVTRDGAIVHPALTGQGA-------  194
1pjca.pdb             164  ETDDALAKGLNVQAHRLVHPAVQ----QVFPDLA  193
                             D              VHPA             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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