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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:08:44 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ala_racemase_N.html
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#====================================
# Aligned_structures: 2
#   1: 1bd0a.pdb
#   2: 1ct5a.pdb
#
# Length:        269
# Identity:       24/269 (  8.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     24/269 (  8.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           80/269 ( 29.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bd0a.pdb               1  V--------DLDAIYDNVENLRRLLPD------DTHIMAVVKANAYGHGDVQVARTALEA   46
1ct5a.pdb               1  -TGITYDEDRKTQLIAQYESVREVVN-AEAKNVKILLLVVSKL-K---P-ASDIQILYDH   53
                                             E  R                 V K                  

1bd0a.pdb              47  GASRLAVAFLDEALALREKGI-E-APILVLGASRPADAALAAQQR--I-ALTVFRSDWLE  101
1ct5a.pdb              54  GVREFGENYVQELIEKAKLL-PDDIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAK  112
                           G          E                  G          A         T        

1bd0a.pdb             102  EASALYS----GPFPIHFHLKMD-T-GMGRLGVKDEEETKRIVALIER--HPHFVLEGLY  153
1ct5a.pdb             113  KLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGL-  171
                                         PI               G   E E                 L GL 

1bd0a.pdb             154  THFATADEVNTDYFSYQYTRFLHMLEWLP----SRPPLVHCA--NSAASLRFPDRT---F  204
1ct5a.pdb             172  TIGSW---------NRDFATLVEWKKKIDAKFGTSLKL----SGS-ADFREAI---RQGT  214
                           T                                    L        A             

1bd0a.pdb             205  NMVRFGIAMYGLAPSPGIKPLLPYPLKEA  233
1ct5a.pdb             215  AEVRIGTDIFG------------------  225
                             VR G    G                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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