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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:20:47 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ald_Xan_dh_1.html
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#====================================
# Aligned_structures: 2
#   1: 1alo.pdb
#   2: 1qj2a.pdb
#
# Length:        197
# Identity:       61/197 ( 31.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     61/197 ( 31.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           42/197 ( 21.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1alo.pdb                1  MIQKVITVNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVILDGKVVRAC   60
1qj2a.pdb               1  KAHIELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSC   60
                                 T NG      V    LL    R Q  LTG   GC    CGAC V LDG  V  C

1alo.pdb               61  VTKMKRVADGAQITTIEGVGQP---ENLHPLQKAWVLHGGAQCGFCSPGFIVSAKGLLDT  117
1qj2a.pdb              61  TMFAVQANG-ASITTIEGMA--APDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQE  117
                                     A ITTIEG         L  LQ       G QCG C PG I     LL  

1alo.pdb              118  NADPSREDVRDWFQKHRNACRCTGYKPLVDAVMDAAAVINGKKPETDLEFKMPADGRIWG  177
1qj2a.pdb             118  NPSPTEAEIRFGIG--GNLCRCTGYQNIVKAIQYAAAKINGVP-----------------  158
                           N  P     R       N CRCTGY   V A   AAA ING                   

1alo.pdb              178  SKYPRPTAVAKVTGTL-  193
1qj2a.pdb             159  ----------------F  159
                                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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