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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:28:23 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Alpha_adaptinC12.html
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#====================================
# Aligned_structures: 2
#   1: 1e42a.pdb
#   2: 1qtsa.pdb
#
# Length:        275
# Identity:       32/275 ( 11.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     32/275 ( 11.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           70/275 ( 25.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1e42a.pdb               1  GGYVA--------------------PKAVWLPAVKAKGLEISGTFTHRQGHIYMEMNFTN   40
1qtsa.pdb               1  -----GSPGIRLGSSEDNFARFVCKNNGVLFE--N-QLLQIGLKSEFRQNLGRMFIFYGN   52
                                                       V         L I      RQ    M     N

1e42a.pdb              41  KALQHMTDFAIQFNKNS------FGVIPS-TPLAIHTPLMPNQSIDVSLPLNTLGPVMKM   93
1qtsa.pdb              53  KTSTQFLNFTPTLIC--ADDLQTNLNLQTKPVD---PTVDGGAQVQQVVNIECI---SDF  104
                           K       F                                                   

1e42a.pdb              94  EPLNNLQVAVKNNIDVFYFSCLIPL--NVLFVEDG-KMERQVFLATWKDIP-NENELQFQ  149
1qtsa.pdb             105  TEAPVLNIQFRYGGTFQNVSVKLPITLNKFFQ--PTEMASQDFFQRWKQLSNPQQEVQNI  162
                                L             S   P   N  F      M  Q F   WK       E Q  

1e42a.pdb             150  IKEC--HLNADTVSSKLQNNNVYTIA-KRNVEGQ----DMLYQSLKLT----NGIWILAE  198
1qtsa.pdb             163  FK-AKHPMDTEITKAKIIGFGSALLEEV------DPNPANFVGAGIIHTKTTQ-IGCLLR  214
                            K             K                                      I  L  

1e42a.pdb             199  LRIQPGNPNYTLSLKCRAPEVSQYIYQVYDSILKN  233
1qtsa.pdb             215  LEPNLQAQMYRLTLRTSKDTVSQRLCELLSEQF--  247
                           L        Y L L      VSQ            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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