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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:29:46 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Amidinotransferase.html
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#====================================
# Aligned_structures: 2
#   1: 1bwda.pdb
#   2: 1jdw.pdb
#
# Length:        375
# Identity:      130/375 ( 34.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    130/375 ( 34.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           42/375 ( 11.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bwda.pdb               1  RSLVSVHNEWDPLEEVIVGTAVGARVPTADRSVFAVEY----AGDYESQEQI-PSGAYPD   55
1jdw.pdb                1  -CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQK-----QGGHYFPK   54
                              VS  NEWDPLEEVIVG A  A VP     V A  Y                    P 

1bwda.pdb              56  RVLKETEEELHVLAAELTKLGVTVRRPGPRDHSALIKTPDWETDGFHDYCPRDGLLSVGQ  115
1jdw.pdb               55  DHLKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGN  114
                             LK    E       L   GVTVRRP P D S   KTPD E  G     PRD L  VG 

1bwda.pdb             116  TIIETPMALRSRFLESLAYKDLLLEYFASGSRWLSAPKPRLTDDSYAPQAPAG-------  168
1jdw.pdb              115  EIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYNQDYPI-HSVEDRH  173
                            IIE PMA RSRF E  AY      YF  G  W  APKP   D  Y    P         

1bwda.pdb             169  -------ERLTDEEPVFDAANVLRFGTDLLYLVSDSGNELGAKWLQSAVGDTYTVHPCRK  221
1jdw.pdb              174  KLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISF  233
                                     T  EP FDAA   R G D     S   N LG  W        Y VH    

1bwda.pdb             222  -LYASTHVDSTIVPLRPGLVLTNPSRVNDENM-PDFL--RSWENITCPELVDIGFTGDK-  276
1jdw.pdb              234  KDPNPMHIDATFNIIGPGIVLSNPDRP-CH--QIDLFKKAGWTIITPPTPII-PD----D  285
                                 H D T     PG VL NP R        D      W  IT P            

1bwda.pdb             277  ---PHCSVWIGMNLLVVRPDLAVVDRRQTALIRLLEKHGMNVLPLQLTHSRTLGGGFHCA  333
1jdw.pdb              286  HPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIRNANSLGGGFHCW  345
                                 S W  MN L        VD          EK G             LGGGFHC 

1bwda.pdb             334  TLDVRRTGALETYQF  348
1jdw.pdb              346  TCDVRRRGTLQSYLD  360
                           T DVRR G L  Y  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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