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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:31:06 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Amino_oxidase.html
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#====================================
# Aligned_structures: 2
#   1: 1f8sa.pdb
#   2: 1h83a.pdb
#
# Length:        544
# Identity:       81/544 ( 14.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     81/544 ( 14.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          147/544 ( 27.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f8sa.pdb               1  NPLAECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLE   59
1h83a.pdb               1  -----------------------------PRVIVVGAGMSGISAAKRLSEAGITDLLILE   31
                                                          V  VGAGM G SAA  L  AG      LE

1f8sa.pdb              60  ASERPGGRVRTYRNEEAGWYANLGPMRLPE------KHRIVREYIR-KFDLRLNEFSQEN  112
1h83a.pdb              32  ATDHIGGRMHKTN-F-AGINVELGANWVE-GVNGGKM-NPIWPIVNSTLKLRNFRSDFDY   87
                           A    GGR        AG    LG                          LR        

1f8sa.pdb             113  -DNAWYFIKNIRK-KVGEVKKDPGLLKYPVKPSEAGK--SAGQLYEESLGKVVEELKRTN  168
1h83a.pdb              88  LA-QNVYKEDGGVYDEDYVQKR---------------IELADSVEEMGEKLSATL-H---  127
                                             V K                   A    E              

1f8sa.pdb             169  CSYILNKYD-TYSTKEYLIKEGDLSPGA-----VDMIGDLLNED---------SGYYVSF  213
1h83a.pdb             128  ASG-----RDDMSILAMQRLNEHQ----PNGPATPVDMVVDY--YKFDYEFAEPPRVTSL  176
                            S          S                                             S 

1f8sa.pdb             214  IE-SLKHDDIFAYE--KRFD-EIVDGMDKLPTAMYRDIQ-----------DKVHFNAQVI  258
1h83a.pdb             177  QNTVP--LATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVR  234
                                     F              G                             N  V 

1f8sa.pdb             259  KIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAV--RLIKFNPPLLPKKAHALRSVH  316
1h83a.pdb             235  EIKYSPGGVTVKTED----NSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFD  290
                            I      VTV  E          ADYV V          LI F P L   K  A     

1f8sa.pdb             317  YRSGTKIFLTCTTKFWE--DDGIHGGKSTTD-L--PSRFIYYPNHNFTNG----VGVIIA  367
1h83a.pdb             291  MAVYTKIFLKFPRKFW-PEGKG-REFFLYASSRRGYYGVWQEFEK-----QYPDANVLLV  343
                               TKIFL    KFW     G                                  V   

1f8sa.pdb             368  YGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQS---FCYP--SVIQKWSLDKYA  422
1h83a.pdb             344  TVTDEESRRIEQQSDEQTKAEIMQVLRKMFP--------GKDVPDATDILVPRWWSDRFY  395
                                                    L                           W  D   

1f8sa.pdb             423  MGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQ-AHGWIDSTIKSGLRAARDVNLASE  481
1h83a.pdb             396  KGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQ  455
                            G              D L A  GR YF GE T     G       SG   A        

1f8sa.pdb             482  N---  482
1h83a.pdb             456  KKMC  459
                               


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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