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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:34:09 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Amino_oxidase_D1.html
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#====================================
# Aligned_structures: 2
#   1: 1f8sa.pdb
#   2: 1h83a.pdb
#
# Length:        410
# Identity:       69/410 ( 16.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     69/410 ( 16.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          104/410 ( 25.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f8sa.pdb               1  NPLAECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLE   59
1h83a.pdb               1  -----------------------------PRVIVVGAGMSGISAAKRLSEAGITDLLILE   31
                                                          V  VGAGM G SAA  L  AG      LE

1f8sa.pdb              60  ASERPGGRVRTYRNEEAGWYANLGPMRLPE------KHRIVREYIR-KFDLRLNEFSQEN  112
1h83a.pdb              32  ATDHIGGRMHKTN-F-AGINVELGANWVE-GVNGGKM-NPIWPIVNSTLKLRNFRSDFDY   87
                           A    GGR        AG    LG                          LR        

1f8sa.pdb             113  -DNAWYFIKNIRK-KVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCS  170
1h83a.pdb              88  LA-QNVYKEDGGVYDEDYVQKR-----------I-E-LADSVEEMGEKLSATL----HAS  129
                                             V K                 A    E               S

1f8sa.pdb             171  YILNKYD-TYSTKEYLIKEGDL-----SPGAVDMIGDLLN----EDSGYYVSFIE-SLKH  219
1h83a.pdb             130  G-----RDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAE-PPRVTSLQNTVP--  181
                                     S                 P               E      S        

1f8sa.pdb             220  DDIFAYEK--RFD-EIVDGMDKLPTAMYRDIQ-----------DKVHFNAQVIKIQQNDQ  265
1h83a.pdb             182  LATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPG  241
                              F              G                             N  V  I     

1f8sa.pdb             266  KVTVVYETLSKETPSVTADYVIVCTTSRAVR--LIKFNPPLLPKKAHALRSVFTPYQFQH  323
1h83a.pdb             242  GVTVKTED----NSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRY  297
                            VTV  E          ADYV V          LI F P L   K  A            

1f8sa.pdb             324  FSDPLTASQGRIYFAGEYTAQ-AHGWIDSTIKSGLRAARDVNLASEN---  369
1h83a.pdb             298  EYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMC  347
                             D L A  GR YF GE T     G       SG   A            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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