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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:44:26 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Arginosuc_synth.html
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#====================================
# Aligned_structures: 2
#   1: 1k92a.pdb
#   2: 1kora.pdb
#
# Length:        456
# Identity:      104/456 ( 22.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    104/456 ( 22.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           88/456 ( 19.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1k92a.pdb               1  TTILKHLPVGQRIGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEEDYDAIPRRA   59
1kora.pdb               1  ----------MKIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQ--GEEVEEAREKA   48
                                       I  A SGGLDTS  L W      A   A TA  GQ   E        A

1k92a.pdb              60  MEYGAENARLID--CRKQLVAEGIAAIQCGAFHNTTGG-LTYFNTTPLGRAVTGTMLVAA  116
1kora.pdb              49  LRTGASKAIALDLKEEF-VRDFVFPMMRAGAVY-----EGYYLLGTSIARPLIAKHLVRI  102
                              GA  A   D                 GA          Y   T   R      LV  

1k92a.pdb             117  MKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWL-DTDFIDELGGRHEMSEFM  175
1kora.pdb             103  AEEEGAEAIAHGATGKGNDQVRFELTAYALKPDIKVIAPWREW-----SFQGRKEMIAYA  157
                             E G      G T KGND  RF               PW           GR EM    

1k92a.pdb             176  IACGFDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIV----NPIMGVKFWDESV-K  230
1kora.pdb             158  EAHGIPVP-----PYSMDANLLHISYEGGVLEDPWAE----PPKGMFRMTQDP-E--EAP  205
                            A G          YS D N L    E   LE                M           

1k92a.pdb             231  IPAEEVTVRFEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGI  290
1kora.pdb             206  DAPEYVEVEFFEGDPVAVNGERL-SPAALLQRLNEIGGRHGVGRVDIVENRFVGMKSRGV  264
                              E V V F  G PVA NG             N IGGRHG G  D  ENR    KSRG 

1k92a.pdb             291  YEAPGMALLHIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQGRWFDSQALMLRDSLQRW  350
1kora.pdb             265  YETPGGTILYHARRAVESLTLDREVLHQRDMLSPKYAELVYYGFWYAPEREALQAYFDHV  324
                           YE PG   L  A               Q          L Y G W       L       

1k92a.pdb             351  VASQITGEVTLELRRGNDYSILNTVSENLTYKPERLTMEKGDSVFSPD--DRIGQLTMRN  408
1kora.pdb             325  -ARSVTGVARLKLYKG-NVYVVGRKAPKSLYR----------------GYDQKDAEGFIK  366
                            A   TG   L L  G              Y                   D         

1k92a.pdb             409  LDITDTREKLFGYAKTGLLSSSAASGVPQVENLENK  444
1kora.pdb             367  IQALRLRVRALVER----------------------  380
                                 R                             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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