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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:49:08 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Asn_synthase_NC.html
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#====================================
# Aligned_structures: 2
#   1: 1ct9a.pdb
#   2: 1jgta.pdb
#
# Length:        570
# Identity:       86/570 ( 15.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     86/570 ( 15.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          153/570 ( 26.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ct9a.pdb               1  ------ASIFGVFDIKTDAVELRKKALELSRLMRH------RGPDWSGIY-AS--D--NA   43
1jgta.pdb               1  PVLPAAFGFLASART--------------------GGGPVFATRGSHTDIDT-PQGERSL   39
                                                                                       

1ct9a.pdb              44  ILAHERLSIVDVNAG----AQPLYNQQK----THVLAVNGEIYNHQALRAEYGDRYQFQT   95
1jgta.pdb              40  AATLVHAPS------VAPDRAVARS---LTGAPTTAVLAGEIYNRDELLSVLPA-GPAP-   88
                                                                  GEIYN   L            

1ct9a.pdb              96  GSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQL  155
1jgta.pdb              89  EGDAELVLRLLERYDLHAFRLVNGRFATVVRTG--DRVLLATDHAGSVPLYTCVA-PGEV  145
                             D E  L L             G FA        D  L   DH G  PLY      G  

1ct9a.pdb             156  YVASEMKALV-PV-------------CRTIKEFPAGSYLWSQD-----GEIRSYYHRDWF  196
1jgta.pdb             146  RASTEAKALAAHPKGFPLADARRVAGLTGVYQVPAGAVMDID-LGSGTAVTHRTWT----  200
                               E KAL                        PAG                        

1ct9a.pdb             197  DYDAVKD----N-VT----DKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITK  247
1jgta.pdb             201  -------PGLSRRILPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAH  253
                                                   R ALE  V           V LSGG DSS   A   

1ct9a.pdb             248  KYA--LHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVT  305
1jgta.pdb             254  RAAGELDTVSMGTDTSNEFREARAVVDHLRTRHREITIPTTELLAQLPYAVWASESVDPD  313
                             A  L     G   S     A  V  HL T H EI     E L          E  D  

1ct9a.pdb             306  TIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAP---NAKELHEETVRKLL  362
1jgta.pdb             314  IIEYLLPLTALYRALD-GPERRILTGYGADIPLGGMH------REDRLPALDTVLAHDMA  366
                            I    P     R          L G G D   GG               L         

1ct9a.pdb             363  ALHMYDCAR--ANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKM-CKMEKHILRECFEA  419
1jgta.pdb             367  TFDGLN---EMSPVLSTLAGHWTTHPYWDREVLDLLVSLEAGLKRRHGRDKWVLRAAMAD  423
                                              G     P  D   LD         K      K  LR     

1ct9a.pdb             420  YLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQV--SDQQLETARFRFPYNTPT--SKEA  475
1jgta.pdb             424  ALPAETVNRPKL----------S-SFSRLLLDHGVAEDR---VHEAKRQ-----VVRELF  464
                            LPA    R K                          D                      

1ct9a.pdb             476  YLYREI--------FEELFPLPSAAECVPG  497
1jgta.pdb             465  DLTVGGGRHPSEVDTDDVVR-SVADRT---  490
                            L                     A      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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