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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:52:39 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Asp_Glu_race.html
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#====================================
# Aligned_structures: 2
#   1: 1b74a.pdb
#   2: 1jfla.pdb
#
# Length:        283
# Identity:       34/283 ( 12.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     34/283 ( 12.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           86/283 ( 30.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b74a.pdb               1  -MKIGI-FD-SGVGGLTVLKAIRNRY-----R-KVDIVYLGDTARVPYGIRSKD-----T   46
1jfla.pdb               1  MKTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPDRTAYI--LGKGED   58
                              IGI               I                                      

1b74a.pdb              47  IIRYSLECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVKEALKKSRN  106
1jfla.pdb              59  PRPQLIWTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIISMIEETAKKVKELG-F  116
                                   A  L   G D I   CNTA     E   K I  P    IE   K        

1b74a.pdb             107  KKIGVIGTPATVKSGAYQRKLEEGGADVFAKACPL------------FAPLAEEGLLEGE  154
1jfla.pdb             117  KKAGLLATTGTIVSGVYEKEFSKYGVEIMTPT-E-DEQKDVMRGIYEGVKAGN----LKL  170
                           KK G   T  T  SG Y       G                                   

1b74a.pdb             155  ITRKVVEHYLKEFKGKIDTLILGCT---HYPLLKKEIKKFLGDAEVVDSSEALSLSLHN-  210
1jfla.pdb             171  GRELLLKTAKILEERGAECIIAGC-TEVSVVLKQDDL-----KVPLIDPMDVIAEVAVKV  224
                                               I GC       L               D            

1b74a.pdb             211  FIKDDGSSSLELFFTDLSPNLQFLIKLILGRDYPVKLAEGVF-  252
1jfla.pdb             225  ALE---------------------------------------K  228
                                                                      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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