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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:54:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Bac_rhodopsin.html
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#====================================
# Aligned_structures: 3
#   1: 1c3wa.pdb
#   2: 1e12a.pdb
#   3: 1jgja.pdb
#
# Length:        248
# Identity:       37/248 ( 14.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    118/248 ( 47.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           39/248 ( 15.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1c3wa.pdb               1  TG---RPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSML   57
1e12a.pdb               1  --RENALLSSSLWVNVALAGIAILVFVYMGRTIRPGRPRLIWGATLMIPLVSISSYLGLL   58
1jgja.pdb               1  ----MVGLTTLFWLGAIGMLVGTLAFAWAGRDA-GSGERRYYVTLVGISGIAAVAYAVMA   55
                                  l   lwlg almg gtL F   Gr       r  y  t  ip ia   Yl ml

1c3wa.pdb              58  LGYGLTMVPF------GGEQNPIYWARYADWLFTTPLLLLDLALLVDADQGTILALVGAD  111
1e12a.pdb              59  SGLTVGMIEMPAGHALAGEMVRSQWGRYLTWALSTPMILLALGLLADVDLGSLFTVIAAD  118
1jgja.pdb              56  LGVGWVPVA----------ERTVFVPRYIDWILTTPLIVYFLGLLAGLDSREFGIVITLN  105
                           lG g  mv                w RY dW ltTPlill LgLLad D g    vi ad

1c3wa.pdb             112  GIMIGTGLVGALTK-VYSYRFVWWAISTAAMLYILYVLFFGFSMRP-E------VASTFK  163
1e12a.pdb             119  IGMCVTGLAAAMTTSALLFRWAFYAISCAFFVVVLSALVTDW--AASASSAG--TAEIFD  174
1jgja.pdb             106  TVVMLAGFAGAMVP-GI-ERYALFGMGAVAFIGLVYYLVGPM--TESASQRSSGIKSLYV  161
                             m  tGlagAmt      R a  ais aaf   ly Lv        a       as f 

1c3wa.pdb             164  VLRNVTVVLWSAYPVVWLIGSEGAGIV-PLNIETLLFMVLDVSAKVGFGLILLRSRAIFG  222
1e12a.pdb             175  TLRVLTVVLWLGYPIVWAVGVEGLALVQSVGATSWAYSVLDVFAKYVFAFILLRWVA---  231
1jgja.pdb             162  RLRNLTVVLWAIYPFIWLLGPPGVALL-TPTVDVALIVYLDLVTKVGFGFIALDAAA---  217
                            LRnlTVVLW  YP vWl G eG alv        l  vLDv aKvgFgfIlLr  A   

1c3wa.pdb                  --------     
1e12a.pdb             232  NNERTVAV  239
1jgja.pdb                  --------     
                                   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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