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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:56:17 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Bacterial_PQQ.html
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#====================================
# Aligned_structures: 3
#   1: 1flga.pdb
#   2: 1g72a.pdb
#   3: 1h4ia.pdb
#
# Length:        647
# Identity:      147/647 ( 22.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    412/647 ( 63.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          117/647 ( 18.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1flga.pdb               1  KDVTWEDIANDDKTTGDVLQYGMGTHAQRWSPLKQVNADNVFKLTPAWSYSFGDEKQRGQ   60
1g72a.pdb               1  ----DADLDKQVNTAGAWPIATGGYYSQHNSPLAQINKSNVKNVKAAWSFSTG--VLNGH   54
1h4ia.pdb               1  ----NDKLVELSKSDDNWVMPGKNYDSNNFSDLKQINKGNVKQLRPAWTFSTG--LLNGH   54
                                 dl    kt g w   g gy sq  SpLkQiNk NVk l pAWsfStG   lnGh

1flga.pdb              61  ESQAIVSDGVIYVTASYSRLFALD-AK-TGKRLWTYNHRLPDDI--RPCCDVVNRGAAIY  116
1g72a.pdb              55  EGAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG  114
1h4ia.pdb              55  EGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYW  114
                           EgaplV dg mYvh sfpnnt al l  pGkilWq kpkq      v CCDvVnRGlAy 

1flga.pdb             117  -G-----DKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVL  170
1g72a.pdb             115  -A-----GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK------DT  162
1h4ia.pdb             115  PGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVK------DK  168
                            g       i k qldg v ALna TGk vWkve  D kvGsTlT AP vvK      d 

1flga.pdb             171  LIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDST-----VTGDVK---  222
1g72a.pdb             163  VLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGS-----------DDSVRLAKDFNSAN  211
1h4ia.pdb             169  VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP-----------DKDLLLASDFNIKN  217
                           vi GsSGaElGVrG l A D kTGE  Wra atg                 la Dfn   

1flga.pdb             223  ---------APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW  273
1g72a.pdb             212  PHYGQFGLGTKTWE---------GDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNET  262
1h4ia.pdb             218  PHYGQKGLGTGTWE---------GDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET  268
                                    t tWe         gdaWkiGGGtnWgwyayDp tNliy G GNPaPWNet

1flga.pdb             274  ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDG  333
1g72a.pdb             263  MRP--------GDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NG  313
1h4ia.pdb             269  MRP--------GDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDG  320
                           mRp        gDnkwTmti GrD dtGeaKwgYQkTPhDeWDfaGvN mvL dqk  dG

1flga.pdb             334  KIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPE  393
1g72a.pdb             314  KMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRM-D  372
1h4ia.pdb             321  KARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRM-D  379
                           K  kll H DRNGi YtldR nG L  A k dd vnvfk vDLKTG PVrdpe  trm d

1flga.pdb             394  PGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGM  453
1g72a.pdb             373  -----HKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA  427
1h4ia.pdb             380  -----HLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYRAGQFFVGA  434
                                hka  icPsamG hNqg dsYdp   lfy g NHicmDwepfmlpYraGqffvGa

1flga.pdb             454  GFRIKRM--Y---D----DHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGT  504
1g72a.pdb             428  TLAMYPGPNGPTKK-----EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYAT  482
1h4ia.pdb             435  TLNMYPGPKG---DRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGT  491
                           tl mypg  g   d       GqirA d  tGk kWek E fa WgGtlaTaG LVfygT

1flga.pdb             505  GDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLW-------  557
1g72a.pdb             483  LDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGVGGWPGV-GLVFDLT  541
1h4ia.pdb             492  LDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGV-GLVFDLA  550
                           lDGYlKA D k GkeLWkFk pSG ig PmTy  kG QY g  yGvGGwpgv        

1flga.pdb             558  -------GGDMADLTR-PVAQGGSFWVFKLP--------------SW  582
1g72a.pdb             542  DPSAGLGAVGAFRELQNHTQMGGGLMVFSL-----------------  571
1h4ia.pdb             551  DPTAGLGAVGAFKKLANYTQMGGGVVVFSLDGKGPYDDPNVGEWK--  595
                                  avgaf  l   tqmGGg  VFsL                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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