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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:57:02 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Bacteriofer.html
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#====================================
# Aligned_structures: 2
#   1: 1bcfa.pdb
#   2: 1jgca.pdb
#
# Length:        160
# Identity:       74/160 ( 46.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     74/160 ( 46.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            3/160 (  1.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bcfa.pdb               1  MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEYHESIDEMKHADRYIE   60
1jgca.pdb               1  MKGDAKVIEFLNAALRSELTAISQYWVHFRLQEDWGLAKMAKKSREESIEEMGHADKIIA   60
                           MKGD KVI  LN  L  EL AI QY  H R    WGL         ESI EM HAD  I 

1bcfa.pdb              61  RILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMM  120
1jgca.pdb              61  RILFLEGHPNLQKLDPLRIGEGPRETLECDLAGEHDALKLYREARDYCAEVGDIVSKNIF  120
                           RILFLEG PNLQ L  L IGE   E L  DLA E D  K  REA  Y   V D VS    

1bcfa.pdb             121  IEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREE---  157
1jgca.pdb             121  ESLITDEEGHVDFLETQISLYDRLGPQGFALLNAAPMDAA  160
                                DEEGH D LET   L    G Q             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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