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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:02:58 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Band_41_M.html
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#====================================
# Aligned_structures: 3
#   1: 1ef1a.pdb
#   2: 1gc7a.pdb
#   3: 1gg3a.pdb
#
# Length:        115
# Identity:       28/115 ( 24.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     93/115 ( 80.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           14/115 ( 12.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ef1a.pdb               1  -DVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHKSGY   59
1gc7a.pdb               1  -DVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGY   59
1gg3a.pdb               1  P-DPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGVDY   59
                             vseeLiqdITqrlffLQvke Ilnd iyCppeTavLLaSYavQskyGDynkE Hk gY

1ef1a.pdb              60  LAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRG-LREDAVLEYLKIAQDL---  110
1gc7a.pdb              60  LANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDL---  111
1gg3a.pdb              60  VSDFKLAPN-------Q-TKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMY  106
                           la dkLlPq       l k qwEEriq wHeehRg lreda lEyLkiAqdL   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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