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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:04:55 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Bcl-2.html
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#====================================
# Aligned_structures: 3
#   1: 1f16a.pdb
#   2: 1gjha.pdb
#   3: 1maz.pdb
#
# Length:        211
# Identity:       28/211 ( 13.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     90/211 ( 42.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           80/211 ( 37.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f16a.pdb               1  MDGSGEQPRGGGPTSSEQIMK--TGALLLQGFIQDRAG---RMGGEAP-E-LAL---DPV   50
1gjha.pdb               1  HAGRT----------------GYDNREIVMKYIHYKLSQRGYEWDA--GD-DVEENRTEA   41
1maz.pdb                1  ------------------MSQ--SNRELVVDFLSYKLSQKGYSWS---QFI---------   28
                                                   nrelv  fi ykls   y w                

1f16a.pdb              51  PQDASTKKLSECLKRIGDELDSNM-E--LQRMIAAVDTDS---PREVFFRVAADMFSDGN  104
1gjha.pdb              42  PEGTESEVVHLTLRQAGDDFSRRYRR-DFAEMSSQLHLTPFT-ARGRFATVVEELFRD-G   98
1maz.pdb               29  -P---MAAVKQALREAGDEFELRYRRA-FSDLTSQLHITP-GTAYQSFEQVVNELFRD-G   81
                                   v   Lr aGDef  ry r  f  m sqlh tp   ar  F  Vv elFrD g

1f16a.pdb             105  FNWGRVVALFYFASKLVLKALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGWDGLLSY  164
1gjha.pdb              99  VNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFVEL  158
1maz.pdb               82  VNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVEL  141
                           vNWGRiVAfF Fgg lcvesv  em  Lv  Ia Wm  yLn hL  WIQdnGGWD fvel

1f16a.pdb             165  FGTPTWQTVTIFVAGVLTASLTIWKKMG---  192
1gjha.pdb             159  YGP-------------------------SMR  164
1maz.pdb              142  YG-----------------------------  143
                           yG                             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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