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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:58:11 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Beta_elim_lyase.html
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#====================================
# Aligned_structures: 2
#   1: 1ax4a.pdb
#   2: 1tpla.pdb
#
# Length:        470
# Identity:      207/470 ( 44.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    207/470 ( 44.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           50/470 ( 10.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ax4a.pdb               1  A-KRIVEPFRIKMVEKIRVPSREEREAALKEAGYNPFLLPSSAVYIDLLTDSGTNAMSDH   59
1tpla.pdb               1  -MNYPAEPFRIKSVETVSMIPRDERLKKMQEAGYNTFLLNSKDIYIDLLTDSGTNAMSDK   59
                                 EPFRIK VE      R ER     EAGYN FLL S   YIDLLTDSGTNAMSD 

1ax4a.pdb              60  QWAAMITGDEAYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGK  119
1tpla.pdb              60  QWAGMMMGDEAYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAI-K------  112
                           QWA M  GDEAYAGS N Y L     ELF    I P HQGRGAEN L             

1ax4a.pdb             120  AKNPVFISNFHFDTTAAHVE---LNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIA  176
1tpla.pdb             113  -PGQYVAG------------NMYKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLID  159
                                                   NG     IV   A D       KGD D KKL   I 

1ax4a.pdb             177  QHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKAR  236
1tpla.pdb             160  EKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTAAHGIKVFYDATRCVENAYFIKEQ  219
                             GA NI  I   VT N AGGQPVSM N   V E    HGI V  D  R  ENAYFIK  

1ax4a.pdb             237  DPKYKNATIKEVIFDMYKYADALTMSAK-DPLLNIGGLVAIRDNEEIFTLARQRCVPMEG  295
1tpla.pdb             220  EQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCM-NDDEMFSSAKELVVVYEG  278
                                N  I E    M  YAD  TMS K D L NIGG        E F  A    V  EG

1ax4a.pdb             296  FVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFV  355
1tpla.pdb             279  MPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFL  338
                              YGGLAGRDM AM  GL E    EY   R  QV YLGD L  AG PI  P GGHAVF 

1ax4a.pdb             356  DCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHA-DMEFMRLT  414
1tpla.pdb             339  DARRFCEHLTQDEFPAQSLAASIYVETGVRSMERG----------------IKLETVRLT  382
                           D          D FPAQ      Y E GVR  E G                   E  RLT

1ax4a.pdb             415  IARRVYTNDHMDYIADALIGLKEKFATLKGLEFEYEPPVLRHFTARLKPI  464
1tpla.pdb             383  IPRRVYTYAHMDVVADGIIKLYQHKEDIRGLKFIY-----F-FTARFDYI  426
                           I RRVYT  HMD  AD  I L        GL F Y       FTAR   I


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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