################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Sat Jul 23 01:06:29 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Binary_toxA.html ################################################################################################ #==================================== # Aligned_structures: 3 # 1: 1g24a.pdb # 2: 1qs1a1.pdb # 3: 1qs1a2.pdb # # Length: 243 # Identity: 21/243 ( 8.6%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 99/243 ( 40.7%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 70/243 ( 28.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1g24a.pdb 1 AYS-NTYQEFTNI---DQAKAWGNAQYKKYG--LSKSEKEAIVSYTK-SAS--EINGKLR 51 1qs1a1.pdb 1 ---TDKVEDFKED--KEKAKEWGKEKEKEWK--LTATEKGKMNNFLD-N--KNDIKTNYK 50 1qs1a2.pdb 1 ------SLDFKNDIN-AEAHSWGMKNYEEWAKDLTDSQREALDGYARQDYK--EINNYLR 51 dFknd Ak WG ykew Lt sekea y eIn lr 1g24a.pdb 52 QN----KGVING-FPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGTEFQNT---- 102 1qs1a1.pdb 51 EITFSMA-----GSFEDEIKDLKEIDKMFDKTNLSNSIITYKNVEPTTIGF-----N--- 97 1qs1a2.pdb 52 NQ----GGS----GNEKLDAQIKNISDALGKKPIPENITVYRWCGMPEFGY-----QISD 98 e likq k idk f K penI yr p G 1g24a.pdb 103 --LLNSNGTINKTAFEKAKAKFLNKDRLEYGYISTSLMNVS-Q--FA-GRPIITKFKVAK 156 1qs1a1.pdb 98 KSLT-EGNTINSDAMAQFKEQFLDRDIKFDSYLDTHLTAQQVS----SKERVILKVTVPS 152 1qs1a2.pdb 99 -------PLP---SLKDFEEQFLNTIKEDKGYMSTSLSSER-LAAFG-SRKIILRLQVPK 146 ti a fkeqFLn d gY sTsL r iIlk Vpk 1g24a.pdb 157 G------SKAGYID-PISAFAGQLEMLLPRHSTYHIDDMRLS-S-DGKQIIITATMMGTA 207 1qs1a1.pdb 153 GKGSTTPTKAGVILNNS-----EYKMLIDNGYMVHVDKVSKVVKKGVECLQIEGTLKK-- 205 1qs1a2.pdb 147 G------STGAYLS-AIGGFASEKEILLDKDSKYHIDKVTEVIIKGVKRYVVDATLLT-- 197 G skagyi i e emLld s yHiDkv v gvk i aTl 1g24a.pdb 208 INP 210 1qs1a1.pdb --- 1qs1a2.pdb --- #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################