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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 05:29:00 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CBS.html
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#====================================
# Aligned_structures: 4
#   1: 1b3ob1.pdb
#   2: 1b3ob2.pdb
#   3: 1zfja1.pdb
#   4: 1zfja2.pdb
#
# Length:         81
# Identity:        2/ 81 (  2.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      9/ 81 ( 11.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           54/ 81 ( 66.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b3ob1.pdb              1  QGF-I---TDPVVLSPKDRVR------------CGIPITDTGRMGS-RLVGI--I-----   36
1b3ob2.pdb              1  IMT-KR--EDLVVAPAGITL-KEANEILQRSKKGKLPIVNE----DDELVAIIART----   48
1zfja1.pdb              1  ---NGV-IIDPFFLTPEHKV-SEAEELQRYR-ISGVPIVETLA--NRKLVGIITNRDR--   50
1zfja2.pdb              1  ------TSEHLVTAAVGTDL-ETAERILHEHRIEKLPLVDN----SGRLSGLITIKDIEK   49
                                    d v                        Piv         Lvgi        

1b3ob1.pdb                 ---------------------     
1b3ob2.pdb             49  ----DL--KKNR---------   54
1zfja1.pdb             51  --FI--SDY-----NAPISEH   62
1zfja2.pdb             50  VIEFPH--AAKDEF-------   61
                                                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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