################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:33:51 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/COX2.html
################################################################################################
#====================================
# Aligned_structures: 3
#   1: 1ar1b.pdb
#   2: 1cyx.pdb
#   3: 2occb.pdb
#
# Length:        301
# Identity:       21/301 (  7.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     70/301 ( 23.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          188/301 ( 62.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ar1b.pdb               1  QDVLGDLPVIGKPVNGGMNFQPASSPLAHDQQWLDHFVLYIITAVTIFVCLLLLICIVRF   60
1cyx.pdb                   ------------------------------------------------------------     
2occb.pdb               1  -----------MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTT-   48
                                                                                       

1ar1b.pdb              61  NRRANPVPARFT--HNTPIEVIWTLVPVLILVAIGAFSLPILFRSQE-MPNDP-DLVIKA  116
1cyx.pdb                1  -----------------------------------------------------KPITIEV    7
2occb.pdb              49  -----KLTHTSTMD-AQEVETIWTILPAIILILIALPSLRILYMM-DE-INNP-SLTVKT   99
                                                                                  ltik 

1ar1b.pdb             117  IGHQWYWSYEYPN-DGVAFDALMLEKEALA---DAGYSEDEYLLATDNPVVVPVGKKVLV  172
1cyx.pdb                8  VSMDWKWFFIYPE-QGIATVN---------------------------EIAFPANTPVYF   39
2occb.pdb             100  MGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGE-------LRLLEVDNRVVLPMEMTIRM  152
                            ghqWyWsyeYp   g afd                             vv P    v  

1ar1b.pdb             173  QVTATDVIHAWTIPAFAVKQDAVPGRIAQLWFSVDQEGVYFGQCSELCGINHAYMPIVVK  232
1cyx.pdb               40  KVTSNSVMHSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGICAEICGPGHSGMKFKAI   99
2occb.pdb             153  LVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLE  212
                            Vts dV Hsw iP lg k dA pGr  ql l    pG Y GqCsEiCG nHs Mpiv  

1ar1b.pdb             233  AV-SQEKYEAWLAGAKEEF-----------AA----------------------------  252
1cyx.pdb              100  ATPDRAAFDQWVAKAKQS-PNTMSDMAAFEK-LAAPSEYNQVEYFSNVKPDLFADVINKF  157
2occb.pdb             213  LV-PLKYFEKWSASML--------------------------------------------  227
                           av     fe W A ak                                            

1ar1b.pdb                  -     
1cyx.pdb              158  M  158
2occb.pdb                  -     
                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################