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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:32:07 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Colicin.html
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#====================================
# Aligned_structures: 3
#   1: 1a87.pdb
#   2: 1cii.pdb
#   3: 1cola.pdb
#
# Length:        224
# Identity:       28/224 ( 12.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    120/224 ( 53.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           61/224 ( 27.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a87.pdb                1  KRKQDELKATKDAINFTT----EFLKSVSEKYGAKAEQLAREMAGQAK-GK---KIRNVE   52
1cii.pdb                1  ------AKDERELLEKTSELIAGMGDKIGEHLGDKYKAIAKDIADNIKNF-QGKTIRSFD   53
1cola.pdb               1  ----EKEKNEKEALLKASELVSGMGDKLGEYLGVKYKNVAKEVANDIKNF-HGRNIRSYN   55
                                  K ekeal kts    gmgdk gE lG Kyk  Ake A  iK f     IRs  

1a87.pdb               53  EALKTYEKYRADINKK----INAKDRAAIAAALESVKLSDISSNLNRFSRGLGYAGKFT-  107
1cii.pdb               54  DAMASLNKITAN----PAMKINKADRDALVNAWKHVDAQDMANKLGNL---SK------A  100
1cola.pdb              56  EAMASLNKVLAN----PKMKVNKSDKDAIVNAWKQVNAKDMANKIGNL---GK------A  102
                           eAmaslnK  An        iNk DrdAivnAwk V a Dmanklgnl    k       

1a87.pdb              108  --------SLADWITEFGKAVRTENWRPLFVKTETIIAG---NAATALVALVFSILTG--  154
1cii.pdb              101  FKVADVVMKVEKVREKSIEGYETGNWGPLMLEVESWV--LSGIASSVALGIFSATLGAY-  157
1cola.pdb             103  FKVADLAIKVEKIREKSIEGYNTGNWGPLLLEVESWI--IGGVVAGVAISLFGAVLSFLP  160
                                   kvek reksiegy TgNWgPL levEswi      aa va  lf a L    

1a87.pdb              155  ---SALGIIG----YGLLMAVTGALIDESLVEKANKFW------  185
1cii.pdb              158  ALSLGVPAIAVGIAGILLAAVVGALIDDKFADALNNEIIR----  197
1cola.pdb             161  I--SGLAVTALGVIGIMTISYLSSFIDANRVSNINNIIS-SVIR  201
                              sgl  ia    gill av galID   v   Nn i      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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