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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:11:34 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/CopC.html
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#====================================
# Aligned_structures: 2
#   1: 1lyqa.pdb
#   2: 1m42a.pdb
#
# Length:        108
# Identity:       60/108 ( 55.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     60/108 ( 55.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           13/108 ( 12.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1lyqa.pdb               1  AH-PELKSSVPQADSAVAAPEKIQLNFSENLTVKFSGAKLTMTG-MKSH---SPMPVAAK   55
1m42a.pdb               1  --HPKLVSSTPAEGSEGAAPAKIELHFSENLVTQFSGAKLVMTAMPG--MEHSPMAVKAA   56
                              P L SS P   S  AAP KI L FSENL   FSGAKL MT         SPM V A 

1lyqa.pdb              56  -VAPGA-DPKSMVIIPREPLPAGTYRVDWRAVSSDTHPITGNYTFTVK  101
1m42a.pdb              57  VSGG-GDP-KTMVITPASPLTAGTYKVDWRAVSSDTHPITGSVTFKVK  102
                                    K MVI P  PL AGTY VDWRAVSSDTHPITG  TF VK


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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