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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:39:45 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Cu_bind_like.html
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#====================================
# Aligned_structures: 3
#   1: 1f56a.pdb
#   2: 1jer.pdb
#   3: 2cbp.pdb
#
# Length:        113
# Identity:       22/113 ( 19.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     54/113 ( 47.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           27/113 ( 23.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f56a.pdb               1  -AVYNIGWSFN--------------VNGARGKSFRAGDVLVFKYIKGQHNVVAV-NGRGY   44
1jer.pdb                1  MQSTVHIVG--DNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSF   58
2cbp.pdb                1  ---AVYVVG--GSGGWT-F----NTESWPKGKRFRAGDILLFNYNPSMHNVVVV-NQGGF   49
                               v  vg                  wa GK FRaGD L Fny    HNVv v n  gf

1f56a.pdb              45  ASCSAPRGART--YSSGQDRIKLT-RGQNYFICSFPGHCGGGMKIAINAK---   91
1jer.pdb               59  DACNF-VNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVAAN  110
2cbp.pdb               50  STCNTPAGAKV--YTSGRDQIKLP-KGQSYFICNFPGHCQSGMKIAVNAL---   96
                             Cn   ga    y sg d ikL   Gq YFiC fpgHC  GmKiaiNa    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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