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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:39:56 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Cu_nir.html
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#====================================
# Aligned_structures: 3
#   1: 1as8a.pdb
#   2: 1bq5.pdb
#   3: 1nif.pdb
#
# Length:        337
# Identity:      211/337 ( 62.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    305/337 ( 90.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            5/337 (  1.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1as8a.pdb               1  ATAAEIAALPRQKVELVDPPFVHAHSQVAEGGPKVVEFTMVIEEKKIVIDDAGTEVHAMA   60
1bq5.pdb                1  ----DADKLPHTKVTLVAPPQVHPHEQATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMT   56
1nif.pdb                1  ----DISTLPRVKVDLVKPPFVHAHDQVAKTGPRVVEFTMTIEEKKLVIDREGTEIHAMT   56
                               di  LPr KV LV PPfVHaH Qvak GPkVVEFTMtIEEKK VIDd GTe hAMt

1as8a.pdb              61  FNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTEINPGEKTILR  120
1bq5.pdb               57  FNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGALGGAKLTNVNPGEQATLR  116
1nif.pdb               57  FNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALGGGALTQVNPGEETTLR  116
                           FNGsvPGPlmVVHe DYveLtLiNP TNtl HNiDFHaATGALGGg LT vNPGE ttLR

1as8a.pdb             121  FKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKALTYDKIYYVGEQDF  180
1bq5.pdb              117  FKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDL  176
1nif.pdb              117  FKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQPLTYDKIYYVGEQDF  176
                           FKAtkpGvFVYHCAPeGMVPWHVvSGMnGaiMVLPRdGLkD kGkpLtYDkiYyvGEqDf

1as8a.pdb             181  YVPRDENGKYKKYEAPGDAYEDTVKVMRTLTPTHVVFNGAVGALTGDKAMTAAVGEKVLI  240
1bq5.pdb              177  YIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGADALTAKVGETVLL  236
1nif.pdb              177  YVPKDEAGNYKKYETPGEAYEDAVKAMRTLTPTHIVFNGAVGALTGDHALTAAVGERVLV  236
                           YvPkde GkYKkYetpgeaYeDtVkvMRTLTPtHiVFNGaVGALTGd AlTAaVGE VL 

1as8a.pdb             241  VHSQANRDTRPHLIGGHGDYVWATGKFNTPPDVDQETWFIPGGAAGAAFYTFQQPGIYAY  300
1bq5.pdb              237  IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAY  296
1nif.pdb              237  VHSQANRDTRPHLIGGHGDYVWATGKFRNPPDLDQETWLIPGGTAGAAFYTFRQPGVYAY  296
                           vHSQANRDTRPHLIGGHGDyVWaTGKF nPPd DqETWfIpGG AGAAfYTF QPGvYAY

1as8a.pdb             301  VNHNLIEAFELGAAAHFKVTGEWNDDLMTSVLAPSG-  336
1bq5.pdb              297  LNHNLIEAFELGAAGHIKVEGKWNDDLMKQIKAPAPI  333
1nif.pdb              297  VNHNLIEAFELGAAGHFKVTGEWNDDLMTSVVKPASM  333
                           vNHNLIEAFELGAAgHfKVtGeWNDDLMtsv aPa  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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