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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:11:36 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Cucumo_coat.html
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#====================================
# Aligned_structures: 2
#   1: 1f15a.pdb
#   2: 1laja.pdb
#
# Length:        177
# Identity:       75/177 ( 42.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     75/177 ( 42.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           23/177 ( 13.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f15a.pdb               1  ------------------ERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKL   42
1laja.pdb               1  NIASSSAPSLQHPTFIASKKCRAGYTYTSLDVRPTRTEKDKSFGQRLIIPVPVSEYPKKK   60
                                               CR GYT TS    P         G RL  P  V EY KK 

1f15a.pdb              43  VSRLQIRVNPLPKFDSTVWVTVRKVPASSDL-SVAAISAMFADGASPVLVYQY-AASGVQ  100
1laja.pdb              61  VSCVQVRLNPSPKFNSTIWVSLRRLD-ETTLLTSENVFKLFTD-GLAVLIYQHVPTG-IQ  117
                           VS  Q R NP PKF ST WV  R       L         F D    VL YQ       Q

1f15a.pdb             101  ANNKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV  157
1laja.pdb             118  PNNKITFDMSNVGAEIGDMGKYALIVYSKDDVLEADEMVIHIDIEHQRIPSASTLPV  174
                            NNK   D S   A IGDM KYA  VYSKDD LE DE V H DIEHQRIP    LPV


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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