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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:18:04 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Cytochrome_C1.html
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#====================================
# Aligned_structures: 2
#   1: 1bgyd.pdb
#   2: 1ezvd.pdb
#
# Length:        263
# Identity:      130/263 ( 49.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    130/263 ( 49.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           40/263 ( 15.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bgyd.pdb               1  S----DLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRH-LVGVC   55
1ezvd.pdb               1  -MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVG-VS   58
                                   LH P Y WSH G     DH SIRRG QVY  VC  CHS D VA R     V 

1bgyd.pdb              56  YTEDEAKALAEEVEVQDGPNEDGEMFMRPG----------------KLSDYFPKPYPNPE   99
1ezvd.pdb              59  HTNEEVRNMAEEFE----------------YDDEPDEQGNPKKRPGKLSDYIPGPYPNEQ  102
                            T  E    AEE E                                KLSDY P PYPN  

1bgyd.pdb             100  AARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYC-EPPTGVSLREGLYFNPYFPGQAI  158
1ezvd.pdb             103  AARAANQGALPPDLSLIVKARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSI  162
                           AARAAN GALPPDLS IV ARHGG DY FSLLTGY  EPP GV L  G   NPYFPG  I

1bgyd.pdb             159  GMAPPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPL  218
1ezvd.pdb             163  AMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLL  222
                            MA        E  DGTPAT SQ AKDV TFL W AEPEHD RKR GLK       L  L

1bgyd.pdb             219  VYAMKRHKWSVLKSRKLAYRPPK  241
1ezvd.pdb             223  SIWVKKFKWAGIKTRKFVFNPPK  245
                               K  KW   K RK    PPK


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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