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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 06:16:27 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DNA_PPF.html
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#====================================
# Aligned_structures: 4
#   1: 1b77a1.pdb
#   2: 1b77a2.pdb
#   3: 1czda1.pdb
#   4: 1czda2.pdb
#
# Length:        141
# Identity:        5/141 (  3.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      7/141 (  5.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           54/141 ( 38.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b77a1.pdb              1  M------KL----SKDTIAILKNFASINSGILLSQ---GKFIMTRAVNGTT-------YA   40
1b77a2.pdb              1  -VASVITEIKAEDLQQLLRVSRGLQ--IDTIAITNKDGKIVINGYNKVE--DSGLTRPKY   55
1czda1.pdb              1  M------KL----SKDTTALLKNFATINSGIMLKS---GQFIMTRAVNGTT-------YA   40
1czda2.pdb              1  -VASAVTEIKAEDLQQLLRVSRGLQ--IDTIAITVKEGKIVINGFNKVE--DSALTRVKY   55
                                                         I          I                  

1b77a1.pdb             41  EANISDE-I--DFDVALYDLNSFLSILSLVS---DDAEISMH-TD--GNIKIADTRSTVY   91
1b77a2.pdb             56  SLTLTDYDGSNNFNFVI-----NMANMK---IQPGNYKVMLWGAGDKVAAKFESSQVSYV  107
1czda1.pdb             41  EANISDV-I--DFDVAIYDLNGFLGILSLVN---DDAEISQS-ED--GNIKIADARSTIF   91
1czda2.pdb             56  SLTLGDYDGENTFNFII-----NMANMK---MQPGNYKLLLWAKGKQGAAKFEGEHANYV  107
                                D      F   i                              g  K         

1b77a1.pdb             92  WPAADKSTIVFPNKPIQFP--  110
1b77a2.pdb            108  IAMEAD-STH---------DF  118
1czda1.pdb             92  WPAADPSTVVAPNKPIPFP--  110
1czda2.pdb            108  VALEAD-STH---------DF  118
                                                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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