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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:25:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DNA_ligase.html
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#====================================
# Aligned_structures: 2
#   1: 1a0i.pdb
#   2: 1fvia.pdb
#
# Length:        248
# Identity:       39/248 ( 15.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     39/248 ( 15.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           81/248 ( 32.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a0i.pdb                1  VNIK--TNPFKAVSF-VESAIKKALDNAG-YLIAEIKYDGVRGNICVDNTANSYWLSRVS   56
1fvia.pdb               1  ----AITKPLLAATLENIEDVQ-------FPCLATPKIAGIRSVKQ------TQMLSRTF   43
                                 T P  A                     A  K  G R             LSR  

1a0i.pdb               57  KTIPA---LEHLNGFDVRWKRLLNDDRCFYKDGFMLDGELMVKGVDFNTGSGLLRTKWTD  113
1fvia.pdb              44  KPIRNSVMNRLLT-------ELLP---------EGSDGEISIEGATFQDTTSAVMTGH--   85
                           K I        L         LL             DGE    G  F        T    

1a0i.pdb              114  TKNQEFHRKKDKVPFKLHTG-HLHIKLYAILPLHIVESGED-CDVMTLLMQEHVKNMLPL  171
1fvia.pdb              86  --------------------AKFSYYWFDYVTD--------DPLKKYIDRVEDMKNYITV  117
                                                                              E  KN    

1a0i.pdb              172  LQ---EYFPEIEWQAAESYEVYDMVELQQLYEQKRAEGHEGLIVKDPMCIYKRGKKSG--  226
1fvia.pdb             118  HPHILEH-AQVKIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFGRSTLKE  176
                                E             E     EL Q        G EG     P   YK G      

1a0i.pdb              227  --WWKMK-  231
1fvia.pdb             177  GILLKMKQ  184
                               KMK 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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