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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:25:47 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DNA_ligase_C.html
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#====================================
# Aligned_structures: 2
#   1: 1a0i.pdb
#   2: 1fvia.pdb
#
# Length:        110
# Identity:       13/110 ( 11.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     13/110 ( 11.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           39/110 ( 35.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a0i.pdb                1  PENEADGIIQGLVWGTKGLANE--------GKVIGFEVLLESGRLVNATN-ISRALMDEF   51
1fvia.pdb               1  -FKDAEATIISMTAL-------FKSGKVEEDVMGSIEVDYD-GVVFSIGTGFD-------   44
                               A   I                           EV    G                 

1a0i.pdb               52  TETVKEATLSQWGFFDACTINPYDGWACQISYMEETPDGSLRHPSFVMFR  101
1fvia.pdb              45  ADQRRDFWQN-K--------ESYIGKMVKFKYFE-M----PRFPVFIGIR   80
                                                 Y G      Y E       R P F   R


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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