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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:26:26 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DNA_methylase.html
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#====================================
# Aligned_structures: 2
#   1: 1dcta.pdb
#   2: 6mhta.pdb
#
# Length:        359
# Identity:       92/359 ( 25.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     92/359 ( 25.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           67/359 ( 18.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dcta.pdb               1  -----------MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSAKLIKG   49
6mhta.pdb               1  MIEIKDKQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE-KPEG   59
                                         I LF G GG  L     G      NE DK     YE N       G

1dcta.pdb              50  DISKISSDEFPKCDGIIGGPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAE  109
6mhta.pdb              60  DITQVNEKTIPDHDILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFME  119
                           DI        P  D    G PCQ  S  G   G  D RG LF    RI   KKP     E

1dcta.pdb             110  NVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNIN-  168
6mhta.pdb             120  NVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQN  179
                           NVK                      Y  H   LNA DYG  Q R R   I FR  LNI  

1dcta.pdb             169  YLPPIPHLIKPTFKDVI--WDLKDNPIPALDK-----NKTNGNKCIY-PNHEYFIG---S  217
6mhta.pdb             180  FQFPKPFELNTFVKDLLLPDSEVEHLVIDRK-DLVMTNQEIEQT---TPKTVRLG-IVGK  234
                              P P       KD                      N          P           

1dcta.pdb             218  YSTIFMSRNRVRQWNEPAFTVQASGR----QCQLHPQAPVMLKVSKNLNKFVEGKEH---  270
6mhta.pdb             235  GGQG---E-RIYSTRGIAITLSAYGGGIFAKTGGYL---------------------VNG  269
                                    R       A T  A G                                   

1dcta.pdb             271  LYRRLTVRECARVQGFPDDFIFHYESLNDGYKMIGNAVPVNLAYEIAKTIKSAL-----  324
6mhta.pdb             270  KTRKLHPRECARVMGYPDSYKV-HPSTSQAYKQFGNSVVINVLQYIAYNIGSSLNFKPY  327
                             R L  RECARV G PD       S    YK  GN V  N    IA  I S L     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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