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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:27:28 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DNA_mis_repair_NM.html
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#====================================
# Aligned_structures: 2
#   1: 1b63a.pdb
#   2: 1h7sa.pdb
#
# Length:        375
# Identity:       61/375 ( 16.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     61/375 ( 16.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          100/375 ( 26.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b63a.pdb               1  SHMPIQVLPPQLANQIAAGEVV----ERPASVVKELVENSLDAGATRIDIDIERGGAKLI   56
1h7sa.pdb               1  ----------------------GQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLI   38
                                                           VKELVENSLDAGAT ID      G  LI

1b63a.pdb              57  RIRDNGCGIKKDELALALARHATSKIASLDDLEAII--SLGFRG-----EALASISSVSR  109
1h7sa.pdb              39  EVSDNGCGVEEENFEGLTL-----------------ADLTQVETFGFRGEALSSLCALSD   81
                              DNGCG                                         EAL S    S 

1b63a.pdb             110  LTLTSRTAEQQEAWQAYAEGRDMNV-TVKPAAHPVGTTLEVLDLFYNTPARRKFL--RTE  166
1h7sa.pdb              82  VTISTCHASAKVGTRLFD--HNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNI-  138
                            T     A                     P   P GTT  V  LF   P R K       

1b63a.pdb             167  KTEFNHIDEIIRRIALARFDVTINLSHN-----GKIVRQYRAVPEGGQKERRLGAICGTA  221
1h7sa.pdb             139  KKEYAK-VQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGS-P--SIKENIGSVFGQK  194
                           K E                                 V                G   G  

1b63a.pdb             222  FLEQALAIEWQH------------------GDLTLRGWVADPNH--TTPALAEIQYCYVN  261
1h7sa.pdb             195  QLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRS-STDRQFFFIN  253
                            L                                  G      H          Q    N

1b63a.pdb             262  GRMMRDRLINHAIRQACEDKLGA-D-QQPAFVLYLEIDPHQVDVNVHPAKH-EVRFHQSR  318
1h7sa.pdb             254  RRPCDPAKVCRLVNEVYHY----NRHQYPFVVLNISVDSECVDI-------NQILLQEEK  302
                            R                        Q P  VL    D   VD                 

1b63a.pdb             319  LVHDFIYQGVLSVLQ  333
1h7sa.pdb             303  LLLAVLKTSLIGFDS  317
                           L              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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