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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:51:32 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DNA_pol3_beta.html
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#====================================
# Aligned_structures: 3
#   1: 2pola1.pdb
#   2: 2pola2.pdb
#   3: 2pola3.pdb
#
# Length:        139
# Identity:        2/139 (  1.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     31/139 ( 22.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           34/139 ( 24.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


2pola1.pdb              1  ---------MKFTVEREHLLKPLQQVSGPLGGR-PTLPILGNLLLQVADGTLSLTGTDLE   50
2pola2.pdb              1  ------QSEVEFTLPQATMKRLIEATQFSMAHQ-DVRYYLNGMLFETEGEELRTVATDGH   53
2pola3.pdb              1  RRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKF------RGVRLYVSENQLKITANNPE   54
                                      ft     lk                     g ll v    L  tatd e

2pola1.pdb             51  -MEMVARVALVQPHEPGATTVPARKFFDICRGLP-EGAEIAVQLEG--ERMLV-R-S-GR  103
2pola2.pdb             54  -RLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGS--NNIRA-H-V-GD  107
2pola3.pdb             55  QEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC--ENVRMMLTDSVSSVQIEDAASQS  112
                             eav      qs       vp   v d  r L       rvql              g 

2pola1.pdb            104  SRFSLSTLPAADFPNLDDW  122
2pola2.pdb            108  FIFTSKLVDGR---FPDY-  122
2pola3.pdb            113  AAYVVMPMRL---------  122
                             f                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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