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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:32:28 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DNA_pol_B_exo.html
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#====================================
# Aligned_structures: 2
#   1: 1clqa.pdb
#   2: 1noza.pdb
#
# Length:        380
# Identity:      208/380 ( 54.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    208/380 ( 54.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           37/380 (  9.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1clqa.pdb               1  MKEFYLTVEQIGDSIFERYIDSNGRERTREVEYKPSLFAHCPESQATKYFDIYGKPCTRK   60
1noza.pdb               1  -DEFYISIETVGNNIVERYIDENGKERTREVEYLPTM---FRHCKE-------GKNCAPQ   49
                             EFY   E  G  I ERYID NG ERTREVEY P                  GK C   

1clqa.pdb              61  LFA---NMRDASQWIKRMEDIGLEALGMDDFKLAYLSDTYNYEIKYDHTKIRVANFDIEV  117
1noza.pdb              50  KFPSMKDARDWMKRGMN------------DFKLAYISDTYGSEIVYDRKFVRVANCDIEV   97
                            F      RD                   DFKLAY SDTY  EI YD    RVAN DIEV

1clqa.pdb             118  TSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDE  177
1noza.pdb              98  T-GDKFPDPMKAEYEIDAITHYDSIDDRFYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDE  156
                           T  D FP P  A   IDAITHYDSIDDRFYVFDLLNS YG V  W    AAKL   GGDE

1clqa.pdb             178  VPSEIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFDIPYVYNRIKNIFGES  237
1noza.pdb             157  VPQEILDRVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGER  216
                           VP EI D  IYMPFDNE   LMEY N W QK P I TGWN E FD PY  NR K I GE 

1clqa.pdb             238  TAKRLSPHRKTRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFE  297
1noza.pdb             217  SMKRFSPIGRVKSKL------SKEIYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHE  270
                             KR SP      K       S EI    G S LDY DLYKKF FTN PS SL      E

1clqa.pdb             298  LNVGKLKYDGPISKLRESNHQRYISYNIIDVYRVLQIDAKRQFINLSLDMGYYAKIQIQS  357
1noza.pdb             271  TKKGKLPYDGPINKLRETNHQRYISYNIIDVESVQAIDKIRGFIDLVLSMSYYAKMPFSG  330
                              GKL YDGPI KLRE NHQRYISYNIIDV  V  ID  R FI L L M YYAK     

1clqa.pdb             358  VFSPIKTWDAIIFNSLKEQN  377
1noza.pdb             331  VMSPIKTWDAIIFNSL----  346
                           V SPIKTWDAIIFNSL    


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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