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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:33:15 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/DNA_polymeraseX.html
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#====================================
# Aligned_structures: 2
#   1: 1bpya.pdb
#   2: 1jqra.pdb
#
# Length:        203
# Identity:       32/203 ( 15.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     32/203 ( 15.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           45/203 ( 22.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bpya.pdb               1  RIPREEMLQMQDIVLNEVKK---------VDSEYIATVCGSFRRGAESSGDMDVLLTHPS   51
1jqra.pdb               1  MLTLIQGKKIVNHLRSRLA-FEYNGQLIKILSK-NIVAVGSLRREEKMLNDVDLLIIVPE   58
                                                          S       GS RR      D D L   P 

1bpya.pdb              52  FTSESTK-QPKLLHQVVEQLQKVH-----FITDTLSKGETKFMGVCQLPSKNDEKEYPHR  105
1jqra.pdb              59  K-----KLLKHVLPNI--------RIKGLS-FSVKVCGERKCVLFIEWE------KK-TY   97
                                 K     L                        GE K                   

1bpya.pdb             106  RIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGE-PLP  164
1jqra.pdb              98  QLDLFTALAEEKPYAIFHFTGPVSYLIRIRAALKKKNYKLNQYGLFKN-----QTLVPLK  152
                             D               FTG        RA    K    N Y              PL 

1bpya.pdb             165  VDSEKDIFDYIQWKYREPKDRSE  187
1jqra.pdb             153  ITTEKELIKELGFTYRIPKKRL-  174
                              EK         YR PK R  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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