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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:39:27 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Dwarfin.html
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#====================================
# Aligned_structures: 2
#   1: 1deva.pdb
#   2: 1ygs.pdb
#
# Length:        201
# Identity:       90/201 ( 44.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     90/201 ( 44.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           18/201 (  9.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1deva.pdb               1  LQPVTYSEPAFWCSIAYYELNQRVGETFHAS--QPSLTVDGFTDPSNSERFCLGLLSNVN   58
1ygs.pdb                1  -------APEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVH   53
                                   P  WCSIAY E    VGETF      P  TVDG  DPS   RFCLG LSNV 

1deva.pdb              59  RNATVEMTRRHIGRGVRLYYIG-GEVFAECLSDSAIFVQSPNCNQRYGWH-P-ATVCKIP  115
1ygs.pdb               54  RTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGR-APGDAVHKIY  112
                           R    E  R HIG GV L   G G V   CLSD A FVQS       G   P   V KI 

1deva.pdb             116  PGCNLKIFNNQEFAALLAQSVNQGFE--AVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTP  173
1ygs.pdb              113  PSAYIKVFDLRQCHRQMQQQAATA--QAVD-DLRRLCILRMSFVKGWGPDYPRQSIKETP  169
                           P    K F          Q             L R C  RMSFVKGWG  Y RQ    TP

1deva.pdb             174  CWIELHLNGPLQWLDKVLTQM  194
1ygs.pdb              170  CWIEIHLHRALQLLDEVLHTM  190
                           CWIE HL   LQ LD VL  M


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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