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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:59:52 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/E2_C.html
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#====================================
# Aligned_structures: 3
#   1: 1a7ge.pdb
#   2: 1by9.pdb
#   3: 2bopa.pdb
#
# Length:         90
# Identity:       20/ 90 ( 22.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     56/ 90 ( 62.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           19/ 90 ( 21.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a7ge.pdb               1  ATTPIIHLKGDANILKCLRYRL-SKYKQLYEQVSSTWHWTC-----TDGKHKNAIVTLTY   54
1by9.pdb                1  -TTPIVHLKGDANTLKCLRYRF-KKHCTLYTAVSSTWHWT-------------AIVTLTY   45
2bopa.pdb               1  --SCFALISGTANQVKCYRFRVKKNHRHRYENCTTTWFTVADNGAERQG---QAQILITF   55
                             tpi hlkGdAN lKClRyR  kkh  lYe vssTWhwt             AivtlTy

1a7ge.pdb              55  ISTSQRDDFLNTVVIPNTVSVSTGYMTI--   82
1by9.pdb               46  DSEWQRDQFLSQVKIPKTITVSTGFMS---   72
2bopa.pdb              56  GSPSQRQDFLKHVPLPPGMNISGFTASLDF   85
                            S sQRddFL  V iP t  vStg ms   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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