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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:13:03 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/EFG_IV.html
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#====================================
# Aligned_structures: 2
#   1: 1dar.pdb
#   2: 1n0vc.pdb
#
# Length:        179
# Identity:       20/179 ( 11.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     20/179 ( 11.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           67/179 ( 37.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1dar.pdb                1  VGKPQVAYRETITKPV--DVEGKFIRQTGGRGQ--YGHVKIKVEPL--------------   42
1n0vc.pdb               1  ISPPVVAYRETVESESSQTALSKSP--------NKH-NRIYLKAE-PIDEEVSLAIENGI   50
                              P VAYRET           K                                     

1dar.pdb               43  ---------------------------------PRGSGFEFVNAIVGGVI--PKEYIPAV   67
1n0vc.pdb              51  INPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAV--QYLHEIKDSV  108
                                                                                 E    V

1dar.pdb               68  QKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEV--DSSEMAFKIAGSMAIKEAVQKGDP  124
1n0vc.pdb             109  VAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADP  167
                                 A   GP  G       V   D   H                 A        DP


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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