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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 19:42:09 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Endonuclease_3.html
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#====================================
# Aligned_structures: 2
#   1: 1mun.pdb
#   2: 2abk.pdb
#
# Length:        242
# Identity:       37/242 ( 15.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     37/242 ( 15.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           48/242 ( 19.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1mun.pdb                1  M----QASQFSAQVLDWYDKYGRKTLPW---QID--KTPYKVWLSEVMLQQTQVATVIPY   51
2abk.pdb                1  -MNKAKRLEILTRLRENNP---------HPTTELNFSSPFELLIAVLLSAQATDVSVNKA   50
                                                                 P           Q     V   

1mun.pdb               52  FERFMARFPTVTDLANAPLDEVLHLWTGLGY-YARARNLHKAAQQVATLHGGKFPETFEE  110
2abk.pdb               51  TAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAA  110
                                    T           V       G     A N  K        H G  PE    

1mun.pdb              111  VAALPGVGRSTAGAILSLSLGKHFPILNGNVKRVLARCYAVSGWPGKKE---VENKLWSL  167
2abk.pdb              111  LEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQ-FA-------PGKNVEQVEEK  162
                             ALPGVGR TA   L    G           RV  R                       

1mun.pdb              168  SEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPG---KKP  224
2abk.pdb              163  LLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEY-----------KEKVD-  210
                              V PA             G   C   KP C  C     C                   

1mun.pdb              225  K-  225
2abk.pdb              211  -I  211
                             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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