################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 19:48:26 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/FA58C.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1euu.pdb # 2: 1gof.pdb # # Length: 153 # Identity: 45/153 ( 29.4%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 45/153 ( 29.4%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 14/153 ( 9.2%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1euu.pdb 1 Q----A-RM-SIADVDSEETARE---DGRASNVIDGNPSTFWHTEWSRADAPGYPHRISL 51 1gof.pdb 1 -ASAPIGSAISRNNWA-VT-CDSAQSGNECNKAIDGNKDTFWHTFYGANGDPKPPHTYTI 57 S IDGN TFWHT P PH 1euu.pdb 52 DLGGTHTISGLQYTRRQN-SANEQVADYEIYTSLNGTTWDGPVASGRFTTSLAPQRAVFP 110 1gof.pdb 58 DMKTTQNVNGLSMLPRQDGNQNGWIGRHEVYLSSDGTNWGSPVASGSWFADSTTKYSNFE 117 D T GL RQ N E Y S GT W PVASG F 1euu.pdb 111 ARDARYIRLVALSEQTGHKYAAVAELEVEGQR- 142 1gof.pdb 118 TRPARYVRLVAITEANGQPWTSIAEINVFQASS 150 R ARY RLVA E G AE V #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################